Omics Data Analysis


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Documentation for package ‘MKomics’ version 0.5

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MKomics-package Omics Data Analysis.
corDist Correlation Distance Matrix Computation
corPlot Plot of similarity matrix based on correlation
heatmapCol Generate colors for heatmaps
madMatrix Compute MAD between colums of a matrix or data.frame
madPlot Plot of similarity matrix based on MAD
MKomics Omics Data Analysis.
mod.oneway.test Moderated 1-Way ANOVA
mod.t.test Moderated t-Test
oneWayAnova A function for Analysis of Variance
pairwise.fc Compute pairwise fold changes
pairwise.logfc Compute pairwise log-fold changes
pairwise.mod.t.test Pairwise Moderated t-Tests
repMeans Compute mean of replicated spots
simPlot Plot of a similarity matrix.
stringDist Function to compute distances between strings
stringSim Function to compute similarity scores between strings
traceBack Function to trace back
twoWayAnova A function for Analysis of Variance