A Shiny App for UCSC Xena Database


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Documentation for package ‘UCSCXenaShiny’ version 0.4.0

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UCSCXenaShiny-package Xena Shiny App
app_run Run Xena Shiny App
available_hosts Show available hosts
dat_datasets Number of datasets in each cohort
dat_samples Number of samples in each cohort
get_pancan_gene_value Fetch identifier value from pan-cancer dataset
get_pancan_value Fetch identifier value from pan-cancer dataset
ope_toil_gene Obtain toilHub info for single gene
tcga_gtex Toil Hub: merged TCGA GTEX selected phenotypes
toil_info Toil Hub: TCGA TARGET GTEX selected phenotypes
toil_surv Toil Hub: TCGA survival data
UCSCXenaShiny Xena Shiny App
vis_toil_gene Visualize single gene expression from toil data hub
vis_toil_TvsN Visualize single gene expression from toil data hub
XenaInfo Summary info of UCSC Xena