Spatial Temporal Aggregated Predictor Models via 'stan'


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Documentation for package ‘rstap’ version 1.0.3

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rstap-package The 'rstap' package.
adapt_delta Target average acceptance probability
as.array.stapreg Extract the posterior sample via matrix
as.data.frame.stapreg Extract the posterior sample via matrix
as.data.frame.summary.stapreg Summary method for stapreg objects
as.matrix.stapreg Extract the posterior sample via matrix
cauchy Prior distributions and options
check_constant_vars Check if any variables in a model frame are constants (the exception is that a constant variable of all 1's is allowed)
coef.stapreg Methods for stapreg objects
confint.stapreg Methods for stapreg objects
decov Prior distributions and options
example_model Example model
exponential Prior distributions and options
fitted.stapreg Methods for stapreg objects
fixef Methods for stapreg objects
fixef.stapreg Methods for stapreg objects
get_stapless_formula get_stapless_formula
homog_distance_data Datasets for rstap examples
homog_longitudinal_bef_data Datasets for rstap examples
homog_longitudinal_distance_data Datasets for rstap examples
homog_longitudinal_subject_data Datasets for rstap examples
homog_longitudinal_time_data Datasets for rstap examples
homog_subject_data Datasets for rstap examples
laplace Prior distributions and options
lasso Prior distributions and options
lkj Prior distributions and options
log_lik Pointwise log-likelihood matrix
log_lik.stapreg Pointwise log-likelihood matrix
log_normal Prior distributions and options
nfix Methods for stapreg objects
nfix.stapreg Methods for stapreg objects
ngrps.stapreg Methods for stapreg objects
nobs.stapreg Methods for stapreg objects
normal Prior distributions and options
nsap.stapreg Methods for stapreg objects
nstap.stapreg Methods for stapreg objects
ntap.stapreg Methods for stapreg objects
pairs.stapreg Pairs method for stapreg objects
pairs_condition Pairs method for stapreg objects
pairs_style_np Pairs method for stapreg objects
plot.stapreg Plot method for stapreg objects
posterior_interval Posterior uncertainty intervals
posterior_interval.stapreg Posterior uncertainty intervals
posterior_predict Draw from posterior predictive distribution
posterior_predict.stapreg Draw from posterior predictive distribution
predictive_error In-sample or out-of-sample predictive errors
predictive_error.stapreg In-sample or out-of-sample predictive errors
predictive_interval Predictive intervals
predictive_interval.ppd Predictive intervals
predictive_interval.stapreg Predictive intervals
print.stapreg Print method for stapreg objects
print.summary.stapreg Summary method for stapreg objects
priors Prior distributions and options
prior_summary Summarize the priors used for an rstap model
prior_summary.stapreg Summarize the priors used for an rstap model
product_normal Prior distributions and options
ranef.stapreg Methods for stapreg objects
residuals.stapreg Methods for stapreg objects
rstap The 'rstap' package.
rstap-datasets Datasets for rstap examples
se.stapreg Methods for stapreg objects
sigma Methods for stapreg objects
sigma.stapreg Methods for stapreg objects
stapreg Create a stapreg object
stapreg-methods Methods for stapreg objects
stapreg-objects Fitted model objects
stap_data Create a stap_data object
stap_glm Bayesian generalized spatial-temporal aggregated predictor(STAP) models via Stan
stap_glm.fit Fitting Generalized Linear STAP models
stap_glmer Bayesian spatial-temporal generalized linear models with group-specific terms via Stan
stap_lm Bayesian generalized spatial-temporal aggregated predictor(STAP) models via Stan
stap_lmer Bayesian spatial-temporal generalized linear models with group-specific terms via Stan
stap_termination Spatial-Temporal Exposure Termination-Maximization Estimates
stap_termination.stapreg Spatial-Temporal Exposure Termination-Maximization Estimates
student_t Prior distributions and options
summary.stapreg Summary method for stapreg objects
validate_distancedata Validate distance_data
validate_family Check family argument
validate_newdata Validate newsubjdata argument for posterior_predict, log_lik, etc.
validate_timedata Validate time_data
validate_weights Check weights argument
VarCorr Methods for stapreg objects
VarCorr.stapreg Methods for stapreg objects
vcov.stapreg Methods for stapreg objects
waic.stapreg WAIC