Continuous Time Distance-Based and Network-Based Individual Level Models for Epidemics

Documentation for package ‘EpiILMCT’ version 1.0

contactnet	Generate binary adjacency contact networks
datagen	Generate epidemics from distance-based and/or network-based continuous-time ILMs.
epictmcmc	Markov Chain Monte Carlo-based tool for analyzing (SIR/SINR) distance-based/network-based individual-level disease data.
epiplot	Epidemic summary plots
loglikelihoodepiILM	Calculates the log likelihood
NetworkData	Simulated epidemic data set from a network-based SIR ILM
NetworkDataSINR	Simulated epidemic data set from a network-based SINR ILM
SpatialData	Simulated epidemic data set from a distance-based SIR ILM
SpatialNetData	Simulated epidemic data set from a distance and network-based SIR ILM
tswv	Tomato Spotted Wilt Virus data