A Tidy API for Graph Manipulation


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Documentation for package ‘tidygraph’ version 1.0.0

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A B C D E G I L M N P R S T U misc

-- A --

activate Determine the context of subsequent manipulations
active Determine the context of subsequent manipulations
as_tbl_graph A data structure for tidy graph manipulation
as_tbl_graph.data.frame A data structure for tidy graph manipulation
as_tbl_graph.default A data structure for tidy graph manipulation
as_tbl_graph.dendrogram A data structure for tidy graph manipulation
as_tbl_graph.evonet A data structure for tidy graph manipulation
as_tbl_graph.graphAM A data structure for tidy graph manipulation
as_tbl_graph.graphBAM A data structure for tidy graph manipulation
as_tbl_graph.graphNEL A data structure for tidy graph manipulation
as_tbl_graph.hclust A data structure for tidy graph manipulation
as_tbl_graph.igraph A data structure for tidy graph manipulation
as_tbl_graph.list A data structure for tidy graph manipulation
as_tbl_graph.matrix A data structure for tidy graph manipulation
as_tbl_graph.network A data structure for tidy graph manipulation
as_tbl_graph.Node A data structure for tidy graph manipulation
as_tbl_graph.phylo A data structure for tidy graph manipulation

-- B --

bfs_after Search a graph with depth first and breath first
bfs_before Search a graph with depth first and breath first
bfs_dist Search a graph with depth first and breath first
bfs_parent Search a graph with depth first and breath first
bfs_rank Search a graph with depth first and breath first
bind_edges Add graphs, nodes, or edges to a tbl_graph
bind_graphs Add graphs, nodes, or edges to a tbl_graph
bind_nodes Add graphs, nodes, or edges to a tbl_graph

-- C --

centrality Calculate node and edge centrality
centrality_alpha Calculate node and edge centrality
centrality_authority Calculate node and edge centrality
centrality_betweenness Calculate node and edge centrality
centrality_closeness Calculate node and edge centrality
centrality_degree Calculate node and edge centrality
centrality_edge_betweenness Calculate node and edge centrality
centrality_eigen Calculate node and edge centrality
centrality_hub Calculate node and edge centrality
centrality_pagerank Calculate node and edge centrality
centrality_power Calculate node and edge centrality
centrality_subgraph Calculate node and edge centrality
component_games Graph games based on connected components
context_accessors Access graph, nodes, and edges directly inside verbs
create_bipartite Create different types of well-defined graphs
create_chordal_ring Create different types of well-defined graphs
create_citation Create different types of well-defined graphs
create_complete Create different types of well-defined graphs
create_de_bruijn Create different types of well-defined graphs
create_empty Create different types of well-defined graphs
create_graphs Create different types of well-defined graphs
create_kautz Create different types of well-defined graphs
create_lattice Create different types of well-defined graphs
create_notable Create different types of well-defined graphs
create_path Create different types of well-defined graphs
create_ring Create different types of well-defined graphs
create_star Create different types of well-defined graphs
create_tree Create different types of well-defined graphs
crystallise Create a temporary alternative representation of the graph to compute on
crystallize Create a temporary alternative representation of the graph to compute on

-- D --

dfs_dist Search a graph with depth first and breath first
dfs_parent Search a graph with depth first and breath first
dfs_rank Search a graph with depth first and breath first
dfs_rank_out Search a graph with depth first and breath first

-- E --

edge_is_loop Querying edge types
edge_is_multiple Querying edge types
edge_is_mutual Querying edge types
edge_types Querying edge types
evolution_games Graph games based on evolution

-- G --

graph_adhesion Graph measurements
graph_assortativity Graph measurements
graph_asym_count Graph measurements
graph_automorphisms Graph measurements
graph_clique_count Graph measurements
graph_clique_num Graph measurements
graph_component_count Graph measurements
graph_diameter Graph measurements
graph_girth Graph measurements
graph_join Join graphs on common nodes
graph_mean_dist Graph measurements
graph_measures Graph measurements
graph_min_cut Graph measurements
graph_motif_count Graph measurements
graph_mutual_count Graph measurements
graph_order Graph measurements
graph_radius Graph measurements
graph_reciprocity Graph measurements
graph_size Graph measurements
graph_unconn_count Graph measurements
group_biconnected_component Group nodes and edges based on community structure
group_components Group nodes and edges based on community structure
group_edge_betweenness Group nodes and edges based on community structure
group_fast_greedy Group nodes and edges based on community structure
group_graph Group nodes and edges based on community structure
group_infomap Group nodes and edges based on community structure
group_label_prop Group nodes and edges based on community structure
group_leading_eigen Group nodes and edges based on community structure
group_louvain Group nodes and edges based on community structure
group_optimal Group nodes and edges based on community structure
group_spinglass Group nodes and edges based on community structure
group_walktrap Group nodes and edges based on community structure

-- I --

is.tbl_graph A data structure for tidy graph manipulation

-- L --

local_ave_degree Measures based on the neighborhood of each node
local_graph Measures based on the neighborhood of each node
local_members Measures based on the neighborhood of each node
local_size Measures based on the neighborhood of each node
local_transitivity Measures based on the neighborhood of each node
local_triangles Measures based on the neighborhood of each node

-- M --

map_bfs Apply a function to nodes in the order of a breath first search
map_bfs_back Apply a function to nodes in the reverse order of a breath first search
map_bfs_back_chr Apply a function to nodes in the reverse order of a breath first search
map_bfs_back_dbl Apply a function to nodes in the reverse order of a breath first search
map_bfs_back_int Apply a function to nodes in the reverse order of a breath first search
map_bfs_back_lgl Apply a function to nodes in the reverse order of a breath first search
map_bfs_chr Apply a function to nodes in the order of a breath first search
map_bfs_dbl Apply a function to nodes in the order of a breath first search
map_bfs_int Apply a function to nodes in the order of a breath first search
map_bfs_lgl Apply a function to nodes in the order of a breath first search
map_dfs Apply a function to nodes in the order of a depth first search
map_dfs_back Apply a function to nodes in the reverse order of a depth first search
map_dfs_back_chr Apply a function to nodes in the reverse order of a depth first search
map_dfs_back_dbl Apply a function to nodes in the reverse order of a depth first search
map_dfs_back_int Apply a function to nodes in the reverse order of a depth first search
map_dfs_back_lgl Apply a function to nodes in the reverse order of a depth first search
map_dfs_chr Apply a function to nodes in the order of a depth first search
map_dfs_dbl Apply a function to nodes in the order of a depth first search
map_dfs_int Apply a function to nodes in the order of a depth first search
map_dfs_lgl Apply a function to nodes in the order of a depth first search
map_local Map a function over a graph representing the neighborhood of each node
map_local_chr Map a function over a graph representing the neighborhood of each node
map_local_dbl Map a function over a graph representing the neighborhood of each node
map_local_int Map a function over a graph representing the neighborhood of each node
map_local_lgl Map a function over a graph representing the neighborhood of each node
morph Create a temporary alternative representation of the graph to compute on
morphers Functions to generate alternate representations of graphs

-- N --

node_adhesion_from Calculate node pair properties
node_adhesion_to Calculate node pair properties
node_bibcoupling_with Calculate node pair properties
node_cocitation_with Calculate node pair properties
node_cohesion_from Calculate node pair properties
node_cohesion_to Calculate node pair properties
node_constraint Querying node measures
node_coreness Querying node measures
node_distance_from Calculate node pair properties
node_distance_to Calculate node pair properties
node_diversity Querying node measures
node_dominator Node properties related to the graph topology
node_eccentricity Querying node measures
node_is_center Querying node types
node_is_cut Querying node types
node_is_isolated Querying node types
node_is_leaf Querying node types
node_is_root Querying node types
node_is_simplical Querying node types
node_is_sink Querying node types
node_is_source Querying node types
node_is_universal Querying node types
node_max_flow_from Calculate node pair properties
node_max_flow_to Calculate node pair properties
node_measures Querying node measures
node_similarity_with Calculate node pair properties
node_topology Node properties related to the graph topology
node_topo_order Node properties related to the graph topology
node_types Querying node types

-- P --

pair_measures Calculate node pair properties
play_barabasi_albert Graph games based on evolution
play_barabasi_albert_aging Graph games based on evolution
play_bipartite Graph games based on different node types
play_blocks Graph games based on connected components
play_blocks_hierarchy Graph games based on connected components
play_citation_age Graph games based on evolution
play_citation_type Graph games based on different node types
play_degree Graph games based on direct sampling
play_dotprod Graph games based on direct sampling
play_erdos_renyi Graph games based on direct sampling
play_fitness Graph games based on direct sampling
play_fitness_power Graph games based on direct sampling
play_forestfire Graph games based on evolution
play_geometry Graph games based on direct sampling
play_growing Graph games based on evolution
play_islands Graph games based on connected components
play_preference Graph games based on different node types
play_preference_asym Graph games based on different node types
play_smallworld Graph games based on connected components
play_traits Graph games based on different node types

-- R --

reroute Change terminal nodes of edges

-- S --

sampling_games Graph games based on direct sampling
search_graph Search a graph with depth first and breath first

-- T --

tbl_graph A data structure for tidy graph manipulation
to_bfs_tree Functions to generate alternate representations of graphs
to_complement Functions to generate alternate representations of graphs
to_components Functions to generate alternate representations of graphs
to_contracted Functions to generate alternate representations of graphs
to_dfs_tree Functions to generate alternate representations of graphs
to_dominator_tree Functions to generate alternate representations of graphs
to_linegraph Functions to generate alternate representations of graphs
to_local_neighborhood Functions to generate alternate representations of graphs
to_minimum_spanning_tree Functions to generate alternate representations of graphs
to_shortest_path Functions to generate alternate representations of graphs
to_simple Functions to generate alternate representations of graphs
to_split Functions to generate alternate representations of graphs
to_subgraph Functions to generate alternate representations of graphs
type_games Graph games based on different node types

-- U --

unmorph Create a temporary alternative representation of the graph to compute on

-- misc --

.E Access graph, nodes, and edges directly inside verbs
.G Access graph, nodes, and edges directly inside verbs
.N Access graph, nodes, and edges directly inside verbs