taxlist-package | Handling taxonomic lists. |
$-method | Extract or replace parts of a 'taxlist' object. |
$<- | Extract or replace parts of a 'taxlist' object. |
$<--method | Extract or replace parts of a 'taxlist' object. |
accepted_name | Retrieve or set accepted name for taxon concepts. |
accepted_name-method | Retrieve or set accepted name for taxon concepts. |
accepted_name<- | Retrieve or set accepted name for taxon concepts. |
accepted_name<--method | Retrieve or set accepted name for taxon concepts. |
add_concept | Insert a new taxon concept in a 'taxlist' object. |
add_concept-method | Insert a new taxon concept in a 'taxlist' object. |
add_level | Add or modify level entries in single concepts. |
add_level-method | Add or modify level entries in single concepts. |
add_level<- | Add or modify level entries in single concepts. |
add_level<--method | Add or modify level entries in single concepts. |
add_parent | Add or modify parent entries in taxon concepts. |
add_parent-method | Add or modify parent entries in taxon concepts. |
add_parent<- | Add or modify parent entries in taxon concepts. |
add_parent<--method | Add or modify parent entries in taxon concepts. |
add_synonym | Insert synonyms in a 'taxlist' object. |
add_synonym-method | Insert synonyms in a 'taxlist' object. |
add_trait | Add trait variables to a taxonomic list. |
add_trait-method | Add trait variables to a taxonomic list. |
add_view | Add a new reference in a taxonomic list. |
add_view-method | Add a new reference in a taxonomic list. |
as.list | Coerce an S4 object to a list. |
as.list-method | Coerce an S4 object to a list. |
backup_object | Backups R objects. |
change_cocept | Move a name to a different concept. |
change_concept<- | Move a name to a different concept. |
change_concept<--method | Move a name to a different concept. |
clean | Clean orphaned records. |
clean-method | Clean orphaned records. |
df2taxlist | Convert a Data Frame into a taxlist Object |
df2taxlist-method | Convert a Data Frame into a taxlist Object |
Easplist | Species list for East Africa. |
Easplist-data | Species list for East Africa. |
Extract | Extract or replace parts of a 'taxlist' object. |
get_children | Retrieve children or parents of determined concepts. |
get_children-method | Retrieve children or parents of determined concepts. |
get_parents | Retrieve children or parents of determined concepts. |
get_parents-method | Retrieve children or parents of determined concepts. |
levels | Set hierarchical levels in 'taxlist' objects |
levels-method | Set hierarchical levels in 'taxlist' objects |
levels<- | Set hierarchical levels in 'taxlist' objects |
levels<--method | Set hierarchical levels in 'taxlist' objects |
merge_taxa | Merge concepts. |
merge_taxa-method | Merge concepts. |
S4_to_list | Coerce an S4 object to a list. |
subset | Subset method for 'taxlist' objects. |
subset-method | Subset method for 'taxlist' objects. |
summary | Print overview for 'taxlist' objects. |
summary-method | Print overview for 'taxlist' objects. |
tax2traits | Add taxonomic information to slot 'taxonTraits'. |
tax2traits-method | Add taxonomic information to slot 'taxonTraits'. |
taxlist | Class taxlist. |
taxlist-class | Class taxlist. |
taxon_names | Retrieve or replace slot 'taxonNames' in 'taxlist' objects. |
taxon_names-method | Retrieve or replace slot 'taxonNames' in 'taxlist' objects. |
taxon_names<- | Retrieve or replace slot 'taxonNames' in 'taxlist' objects. |
taxon_names<--method | Retrieve or replace slot 'taxonNames' in 'taxlist' objects. |
taxon_relations | Retrieve or replace Slot 'taxonRelations' in 'taxlist' objects |
taxon_relations-method | Retrieve or replace Slot 'taxonRelations' in 'taxlist' objects |
taxon_relations<- | Retrieve or replace Slot 'taxonRelations' in 'taxlist' objects |
taxon_relations<--method | Retrieve or replace Slot 'taxonRelations' in 'taxlist' objects |
taxon_traits | Retrieve or replace slot 'taxonTraits' in "taxlist" objects. |
taxon_traits-method | Retrieve or replace slot 'taxonTraits' in "taxlist" objects. |
taxon_traits<- | Retrieve or replace slot 'taxonTraits' in "taxlist" objects. |
taxon_traits<--method | Retrieve or replace slot 'taxonTraits' in "taxlist" objects. |
taxon_views | Management of concept views in taxonomic lists. |
taxon_views-method | Management of concept views in taxonomic lists. |
taxon_views<- | Management of concept views in taxonomic lists. |
taxon_views<--method | Management of concept views in taxonomic lists. |
tnrs | Phylotastic Taxonomic Name Resolution Service. |
tnrs-method | Phylotastic Taxonomic Name Resolution Service. |
tv2taxlist | Import species lists from Turboveg databases. |
[ | Extract or replace parts of a 'taxlist' object. |
[-method | Extract or replace parts of a 'taxlist' object. |
[<- | Extract or replace parts of a 'taxlist' object. |
[<--method | Extract or replace parts of a 'taxlist' object. |