Tools for Ecological Network Analysis


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Documentation for package ‘enaR’ version 3.0.0

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enaR-package Tools for Ecological Network Analysis (ena)
as.bipartite Converts a network object (unipartite) to a two-mode (bipartite) network representation.
as.extended Create an Extended Format Matrix
bal Balancing by Either Inputs or Outputs
balance Balance Flow Network Models
bcratio Calculates the Ratio of Positive to Negative Elements in a Network
bgcModels Bigeochemical Cycling Models
cycliv Analysis of Feeding Cycles in a Network
EcoNetWeb Access example EcoNet models from the EcoNet website.
eigenCentrality the Eigen Centrality of a Network
enaAll Conduct All Major ENA
enaAscendency Calculates the Ascendency of an Ecological Network
enaControl Control Analyses of Ecological Networks
enaCycle Full Cycle Analysis of Ecological Networks
enaEnviron Ecological Network Environs
enaFlow Analyses of Ecological Networks
enaModelInfo Ecosystem Model Information
enaModels Ecosystem Models
enaMTI Mixed Trophic Impacts (MTI) Analysis
enaR Tools for Ecological Network Analysis (ena)
enaStorage Storage Analyses of Ecological Networks
enaStructure Structure Analyses of Ecological Network
enaTroAgg Trophic Aggregations (TroAgg) Analysis
enaUncertainty Produce a set of plausible network models
enaUtility Utility Analysis of Ecological Networks
environCentrality Environ Centrality an Ecological Network
findPathLength Cumulative Flow over a Range of Path Lengths
force.balance Repeated Application the Balance Function
get.ns Quick Calculation of a Range of Network Statistics.
get.orient Returns the global orientation
m.list Sub-set of the Larger Ecosystem Models
meanTrophicLevel meanTrophicLevel INPUT = network data object, min trophic level choice OUTPUT = mean trophic level
mExp Calculate the exponent of a given matrix
netOrder Reorder Nodes in a Network in enaR
oyster Intertidal Oyster Reef Ecosystem Model
pack Compile Network Information into a Network Class
read.EcoNet Read an EcoNet model.
read.enam R function to read in a matrix formatted as Mdloti (Ursula Sharler)
read.nea Read an NEA formatted model into a network object
read.scor SCOR formatted file into R in multiple formats INPUT = file path
read.wand WAND formatted file into R
relationalChange Relational change compared between two matrices.
scc Find the strongly connected component
scifix scifix Corrects missing e or E in scientific notation
set.orient Globally reorients matrices
ShannonDiversity ShannonDiversity Shannon Diversity Metrics
signs Signs and summary of input matrix
ssCheck Checks if the given network is out of balance by a given tolerance threshold
structure.statistics structural statistics
TES Calculates the Total Environ Storage
TET Calculate the Total Environ Throughflow
troModels Trophic Models
unpack Extracts network object into a list
write.EcoNet Write enaR models to an EcoNet formatted file.
write.nea Create a formatted file with data arranged as expected input for NEA.m