abundanceMatrix |
Create a community matrix of taxon abundances. |
adaptiveExtinction |
Adaptive Beta Functions |
adaptiveExtinction,adaptiveOrigination,thetaNegative,thetaPositive,lambdaNegative,lambdaPositive |
Adaptive Beta Functions |
adaptiveOrigination |
Adaptive Beta Functions |
ageRanges |
Find the age range for each taxon in a dataframe |
cleanTaxonomy |
Clean taxonomic names |
completeTurnovers |
Multiplicative Diversity Partitioning |
constrainAges |
Constrain a dataset to only occurrences within a certain age-range |
constrainAges,multiplyAges |
Constrain a dataset to only occurrences within a certain age-range |
cullMatrix |
Cull rare taxa and depauperate samples |
cullMatrix,errorMatrix,culltaxa,cullSamples,occurrencesFlag,diversityFlag,softCull,softTaxa,softSamples |
Cull rare taxa and depauperate samples |
downloadPaleogeography |
Downloads paleogeographic maps |
downloadPBDB |
Download Occurrences from the Paleobiology Database |
downloadTime |
Download geologic timescale |
meanAlpha |
Additive Diversity Partitioning functions |
multiplicativeBeta |
Multiplicative Diversity Partitioning |
multiplicativeBeta,completeTurnovers,notEndemic |
Multiplicative Diversity Partitioning |
multiplyAges |
Constrain a dataset to only occurrences within a certain age-range |
notEndemic |
Multiplicative Diversity Partitioning |
presenceMatrix |
Create a matrix of presences and absences |
sampleBeta |
Additive Diversity Partitioning functions |
subsampleEvenness |
Shareholder Quorum Subsampling |
subsampleIndividuals |
Iterative Rarefaction |
taxonAlpha |
Additive Diversity Partitioning functions |
taxonAlpha,meanAlpha,taxonBeta,sampleBeta,totalGamma |
Additive Diversity Partitioning functions |
taxonBeta |
Additive Diversity Partitioning functions |
totalBeta |
Additive Diversity Partitioning functions |
totalGamma |
Additive Diversity Partitioning functions |
uniformExtinction |
Uniform Confidence Intervals |
uniformExtinction,uniformOrigination |
Uniform Confidence Intervals |
uniformOrigination |
Uniform Confidence Intervals |