* using log directory 'd:/Rcompile/CRANpkg/local/3.6/D3GB.Rcheck' * using R version 3.6.3 (2020-02-29) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'D3GB/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'D3GB' version '1.1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'D3GB' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [6s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ERROR Running examples in 'D3GB-Ex.R' failed The error most likely occurred in: > ### Name: getAssemblyFromFasta > ### Title: Create an assembly from a FASTA file for its use as parameter of > ### 'genomebrowser' or 'genomemap'. > ### Aliases: getAssemblyFromFasta > > ### ** Examples > > # Download fasta file > fasta <- tempfile() > download.file(paste0("ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/297/395/", + "GCF_000297395.2_ASM29739v2/GCF_000297395.2_ASM29739v2_genomic.fna.gz"),fasta) trying URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/297/395/GCF_000297395.2_ASM29739v2/GCF_000297395.2_ASM29739v2_genomic.fna.gz' Warning in download.file(paste0("ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/297/395/", : InternetOpenUrl failed: 'In den Microsoft-Interneterweiterungen ist ein interner Fehler aufgetreten. ' Error in download.file(paste0("ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/297/395/", : cannot open URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/297/395/GCF_000297395.2_ASM29739v2/GCF_000297395.2_ASM29739v2_genomic.fna.gz' Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [63s] WARNING Error(s) in re-building vignettes: --- re-building 'D3GB.Rmd' using rmarkdown trying URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/297/395/GCF_000297395.2_ASM29739v2/GCF_000297395.2_ASM29739v2_genomic.gbff.gz' Warning in download.file("ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/297/395/GCF_000297395.2_ASM29739v2/GCF_000297395.2_ASM29739v2_genomic.gbff.gz", : InternetOpenUrl failed: 'In den Microsoft-Interneterweiterungen ist ein interner Fehler aufgetreten. ' Quitting from lines 20-30 (D3GB.Rmd) Error: processing vignette 'D3GB.Rmd' failed with diagnostics: cannot open URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/297/395/GCF_000297395.2_ASM29739v2/GCF_000297395.2_ASM29739v2_genomic.gbff.gz' --- failed re-building 'D3GB.Rmd' SUMMARY: processing the following file failed: 'D3GB.Rmd' Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... OK * DONE Status: 1 ERROR, 1 WARNING