* using log directory 'd:/Rcompile/CRANpkg/local/3.6/eaf.Rcheck' * using R version 3.6.3 (2020-02-29) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'eaf/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'eaf' version '2.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'eaf' can be installed ... ERROR Installation failed. See 'd:/Rcompile/CRANpkg/local/3.6/eaf.Rcheck/00install.out' for details. * DONE The installation logfile: * installing *source* package 'eaf' ... ** package 'eaf' successfully unpacked and MD5 sums checked ** using staged installation ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs *** arch - i386 make[1]: Entering directory `/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386' "D:/RCompile/recent/R-3.6.3/bin/i386/Rscript.exe" "../tools/winlibs.R" d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"D:/RCompile/recent/R-3.6.3/include" -DNDEBUG -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -DR_PACKAGE -DDEBUG=1 -I./eaf/ -I./mo-tools/ -I"d:/Compiler/gcc-4.9.3/local330/include" -O3 -Wall -std=gnu99 -mtune=core2 -c eaf/avl.c -o eaf/avl.o d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"D:/RCompile/recent/R-3.6.3/include" -DNDEBUG -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -DR_PACKAGE -DDEBUG=1 -I./eaf/ -I./mo-tools/ -I"d:/Compiler/gcc-4.9.3/local330/include" -O3 -Wall -std=gnu99 -mtune=core2 -c eaf/eaf3d.c -o eaf/eaf3d.o d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"D:/RCompile/recent/R-3.6.3/include" -DNDEBUG -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -DR_PACKAGE -DDEBUG=1 -I./eaf/ -I./mo-tools/ -I"d:/Compiler/gcc-4.9.3/local330/include" -O3 -Wall -std=gnu99 -mtune=core2 -c eaf/eaf.c -o eaf/eaf.o d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"D:/RCompile/recent/R-3.6.3/include" -DNDEBUG -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -DR_PACKAGE -DDEBUG=1 -I./eaf/ -I./mo-tools/ -I"d:/Compiler/gcc-4.9.3/local330/include" -O3 -Wall -std=gnu99 -mtune=core2 -c eaf/io.c -o eaf/io.o d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"D:/RCompile/recent/R-3.6.3/include" -DNDEBUG -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -DR_PACKAGE -DDEBUG=1 -I./eaf/ -I./mo-tools/ -I"d:/Compiler/gcc-4.9.3/local330/include" -O3 -Wall -std=gnu99 -mtune=core2 -c mo-tools/hv_contrib.c -o mo-tools/hv_contrib.o d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"D:/RCompile/recent/R-3.6.3/include" -DNDEBUG -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -DR_PACKAGE -DDEBUG=1 -I./eaf/ -I./mo-tools/ -DVARIANT=4 -I"d:/Compiler/gcc-4.9.3/local330/include" -O3 -Wall -std=gnu99 -mtune=core2 -c mo-tools/hv.c -o mo-tools/hv.o d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"D:/RCompile/recent/R-3.6.3/include" -DNDEBUG -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -DR_PACKAGE -DDEBUG=1 -I./eaf/ -I./mo-tools/ -I"d:/Compiler/gcc-4.9.3/local330/include" -O3 -Wall -std=gnu99 -mtune=core2 -c mo-tools/pareto.c -o mo-tools/pareto.o d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"D:/RCompile/recent/R-3.6.3/include" -DNDEBUG -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -DR_PACKAGE -DDEBUG=1 -I./eaf/ -I./mo-tools/ -I"d:/Compiler/gcc-4.9.3/local330/include" -O3 -Wall -std=gnu99 -mtune=core2 -c mo-tools/whv.c -o mo-tools/whv.o d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"D:/RCompile/recent/R-3.6.3/include" -DNDEBUG -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -DR_PACKAGE -DDEBUG=1 -I./eaf/ -I./mo-tools/ -I"d:/Compiler/gcc-4.9.3/local330/include" -O3 -Wall -std=gnu99 -mtune=core2 -c mo-tools/whv_hype.c -o mo-tools/whv_hype.o d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"D:/RCompile/recent/R-3.6.3/include" -DNDEBUG -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -DR_PACKAGE -DDEBUG=1 -I./eaf/ -I./mo-tools/ -I"d:/Compiler/gcc-4.9.3/local330/include" -O3 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"D:/RCompile/recent/R-3.6.3/include" -DNDEBUG -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -DR_PACKAGE -DDEBUG=1 -I./eaf/ -I./mo-tools/ -I"d:/Compiler/gcc-4.9.3/local330/include" -O3 -Wall -std=gnu99 -mtune=core2 -c Reaf.c -o Reaf.o d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"D:/RCompile/recent/R-3.6.3/include" -DNDEBUG -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -DR_PACKAGE -DDEBUG=1 -I./eaf/ -I./mo-tools/ -I"d:/Compiler/gcc-4.9.3/local330/include" -O3 -Wall -std=gnu99 -mtune=core2 -c Repsilon.c -o Repsilon.o d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"D:/RCompile/recent/R-3.6.3/include" -DNDEBUG -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -DR_PACKAGE -DDEBUG=1 -I./eaf/ -I./mo-tools/ -I"d:/Compiler/gcc-4.9.3/local330/include" -O3 -Wall -std=gnu99 -mtune=core2 -c Rhv.c -o Rhv.o d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"D:/RCompile/recent/R-3.6.3/include" -DNDEBUG -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -DR_PACKAGE -DDEBUG=1 -I./eaf/ -I./mo-tools/ -I"d:/Compiler/gcc-4.9.3/local330/include" -O3 -Wall -std=gnu99 -mtune=core2 -c Rnondominated.c -o Rnondominated.o d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -shared -s -static-libgcc -o eaf.dll tmp.def eaf/avl.o eaf/eaf3d.o eaf/eaf.o eaf/io.o mo-tools/hv_contrib.o mo-tools/hv.o mo-tools/pareto.o mo-tools/whv.o mo-tools/whv_hype.o init.o Reaf.o Repsilon.o Rhv.o Rnondominated.o -L/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/lib/i386 -lgsl -lgslcblas -Ld:/Compiler/gcc-4.9.3/local330/lib/i386 -Ld:/Compiler/gcc-4.9.3/local330/lib -LD:/RCompile/recent/R-3.6.3/bin/i386 -lR make -C eaf all march=none CC="d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc " CFLAGS="-O3 -Wall -std=gnu99 -mtune=core2" OPT_CFLAGS="" WARN_CFLAGS="" DEBUG=0 EXE=.exe which: not found make[2]: Entering directory `/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/eaf' ---> Removing ./eaf.exe <--- ---> Removing object files eaf.o io.o eaf_main.o eaf3d.o avl.o <--- make default which: not found make[3]: Entering directory `/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/eaf' d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -DDEBUG=0 -DVERSION='"0.1svn272"' -DMARCH='"none"' -O3 -Wall -std=gnu99 -mtune=core2 -c -o eaf.o eaf.c d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -DDEBUG=0 -DVERSION='"0.1svn272"' -DMARCH='"none"' -O3 -Wall -std=gnu99 -mtune=core2 -c -o io.o io.c d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -DDEBUG=0 -DVERSION='"0.1svn272"' -DMARCH='"none"' -O3 -Wall -std=gnu99 -mtune=core2 -c -o eaf_main.o eaf_main.c d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -DDEBUG=0 -DVERSION='"0.1svn272"' -DMARCH='"none"' -O3 -Wall -std=gnu99 -mtune=core2 -c -o eaf3d.o eaf3d.c d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -DDEBUG=0 -DVERSION='"0.1svn272"' -DMARCH='"none"' -O3 -Wall -std=gnu99 -mtune=core2 -c -o avl.o avl.c --> Building eaf.exe version 0.1svn272 <--- d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -o eaf.exe eaf.o io.o eaf_main.o eaf3d.o avl.o -DDEBUG=0 -DVERSION='"0.1svn272"' -DMARCH='"none"' -O3 -Wall -std=gnu99 -mtune=core2 -lm make[3]: Leaving directory `/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/eaf' make[2]: Leaving directory `/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/eaf' make -C mo-tools all march=none CC="d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc " CFLAGS="-O3 -Wall -std=gnu99 -mtune=core2" OPT_CFLAGS="" WARN_CFLAGS="" DEBUG=0 EXE=.exe which: not found make[2]: Entering directory `/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/mo-tools' ---> Removing ./igd.exe <--- ---> Removing ./epsilon.exe <--- ---> Removing ./dominatedsets.exe <--- ---> Removing ./nondominated.exe <--- ---> Removing ./ndsort.exe <--- ---> Removing object files: igd.o epsilon.o dominatedsets.o nondominated.o io.o ndsort.o hv_contrib.o hv.o pareto.o whv.o whv_hype.o <--- make default which: not found make[3]: Entering directory `/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/mo-tools' d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn165\" -DMARCH='"none"' -O3 -Wall -std=gnu99 -mtune=core2 -c -o igd.o igd.c d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn165\" -DMARCH='"none"' -O3 -Wall -std=gnu99 -mtune=core2 -c -o io.o io.c --> Building igd.exe version 1.0svn165 <--- d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -o igd.exe igd.o io.o -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn165\" -DMARCH='"none"' -O3 -Wall -std=gnu99 -mtune=core2 -lm d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn165\" -DMARCH='"none"' -O3 -Wall -std=gnu99 -mtune=core2 -c -o epsilon.o epsilon.c --> Building epsilon.exe version 1.0svn165 <--- d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -o epsilon.exe epsilon.o io.o -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn165\" -DMARCH='"none"' -O3 -Wall -std=gnu99 -mtune=core2 -lm d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn165\" -DMARCH='"none"' -O3 -Wall -std=gnu99 -mtune=core2 -c -o dominatedsets.o dominatedsets.c --> Building dominatedsets.exe version 1.0svn165 <--- d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -o dominatedsets.exe dominatedsets.o io.o -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn165\" -DMARCH='"none"' -O3 -Wall -std=gnu99 -mtune=core2 -lm d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn165\" -DMARCH='"none"' -O3 -Wall -std=gnu99 -mtune=core2 -c -o nondominated.o nondominated.c --> Building nondominated.exe version 1.0svn165 <--- d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -o nondominated.exe nondominated.o io.o -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn165\" -DMARCH='"none"' -O3 -Wall -std=gnu99 -mtune=core2 -lm d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn165\" -DMARCH='"none"' -O3 -Wall -std=gnu99 -mtune=core2 -c -o ndsort.o ndsort.c d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn165\" -DMARCH='"none"' -O3 -Wall -std=gnu99 -mtune=core2 -c -o hv_contrib.o hv_contrib.c d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn165\" -DMARCH='"none"' -O3 -Wall -std=gnu99 -mtune=core2 -c -o hv.o hv.c d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn165\" -DMARCH='"none"' -O3 -Wall -std=gnu99 -mtune=core2 -c -o pareto.o pareto.c d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn165\" -DMARCH='"none"' -O3 -Wall -std=gnu99 -mtune=core2 -c -o whv.o whv.c whv.c: In function 'rect_weighted_hv2d': whv.c:62:5: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' [-Wformat=] DEBUG2_PRINT("n = %ld\trectangles = %ld\n", n, rectangles_nrow); ^ whv.c:62:5: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' [-Wformat=] d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/../windows/gsl-2.4/include" -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn165\" -DMARCH='"none"' -O3 -Wall -std=gnu99 -mtune=core2 -c -o whv_hype.o whv_hype.c whv_hype.c:8:27: fatal error: gsl/gsl_errno.h: No such file or directory #include ^ compilation terminated. make[3]: *** [whv_hype.o] Error 1 make[3]: Leaving directory `/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/mo-tools' make[2]: *** [all] Error 2 make[2]: Leaving directory `/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386/mo-tools' make[1]: *** [all] Error 2 make[1]: Leaving directory `/cygdrive/d/temp/RtmpU7rqxV/R.INSTALLbf0c4dfefdf/eaf/src-i386' ERROR: compilation failed for package 'eaf' * removing 'd:/Rcompile/CRANpkg/lib/3.6/eaf' * restoring previous 'd:/Rcompile/CRANpkg/lib/3.6/eaf'