* using log directory 'd:/Rcompile/CRANpkg/local/3.6/gfilogisreg.Rcheck' * using R version 3.6.3 (2020-02-29) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'gfilogisreg/DESCRIPTION' ... OK * this is package 'gfilogisreg' version '1.0.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'gfilogisreg' can be installed ... ERROR Installation failed. See 'd:/Rcompile/CRANpkg/local/3.6/gfilogisreg.Rcheck/00install.out' for details. * DONE The installation logfile: * installing *source* package 'gfilogisreg' ... ** package 'gfilogisreg' successfully unpacked and MD5 sums checked ** using staged installation ** libs *** arch - i386 make[1]: Entering directory `/cygdrive/d/temp/RtmpOM84hJ/R.INSTALL2f5c58bf60e2/gfilogisreg/src-i386' d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-3.6.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.6/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.6/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.6/roptim/include" -I"d:/RCompile/CRANpkg/lib/3.6/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-3.6.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.6/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.6/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.6/roptim/include" -I"d:/RCompile/CRANpkg/lib/3.6/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -O2 -Wall -mtune=core2 -c gfilogisreg.cpp -o gfilogisreg.o In file included from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/traits/is_variable_precision.hpp:10:0, from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/detail/precision.hpp:9, from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/number.hpp:25, from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/gmp.hpp:9, from gfilogisreg.cpp:1: d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/detail/number_base.hpp:38:83: note: #pragma message: CAUTION: One or more C++11 features were found to be unavailable #pragma message("CAUTION: One or more C++11 features were found to be unavailable") ^ d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/detail/number_base.hpp:39:153: note: #pragma message: CAUTION: Compiling Boost.Multiprecision in non-C++11 or later conformance modes is now deprecated and will be removed from March 2021. #pragma message("CAUTION: Compiling Boost.Multiprecision in non-C++11 or later conformance modes is now deprecated and will be removed from March 2021.") ^ d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/detail/number_base.hpp:40:98: note: #pragma message: CAUTION: Define BOOST_MP_DISABLE_DEPRECATE_03_WARNING to suppress this message. #pragma message("CAUTION: Define BOOST_MP_DISABLE_DEPRECATE_03_WARNING to suppress this message.") ^ In file included from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/math/constants/constants.hpp:11:0, from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/math/special_functions/asinh.hpp:25, from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/gmp.hpp:21, from gfilogisreg.cpp:1: d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/math/tools/cxx03_warn.hpp:99:75: note: #pragma message: CAUTION: One or more C++11 features were found to be unavailable BOOST_PRAGMA_MESSAGE("CAUTION: One or more C++11 features were found to be unavailable") ^ In file included from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/math/constants/constants.hpp:11:0, from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/math/special_functions/asinh.hpp:25, from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/gmp.hpp:21, from gfilogisreg.cpp:1: d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/math/tools/cxx03_warn.hpp:100:126: note: #pragma message: CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021. BOOST_PRAGMA_MESSAGE("CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.") ^ d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/math/tools/cxx03_warn.hpp:101:93: note: #pragma message: CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message. BOOST_PRAGMA_MESSAGE("CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.") ^ d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/math/tools/cxx03_warn.hpp:102:96: note: #pragma message: CAUTION: This message was generated due to the define: BOOST_NO_CXX11_THREAD_LOCAL BOOST_PRAGMA_MESSAGE("CAUTION: This message was generated due to the define: " BOOST_MATH_CXX03_WARN_REASON) ^ gfilogisreg.cpp: In function 'double f(const vec&, const mat&, const vec&)': gfilogisreg.cpp:48:25: error: 'isnormal' was not declared in this scope return isnormal(result) ? result : 0.0; ^ gfilogisreg.cpp:48:25: note: suggested alternatives: In file included from D:/Compiler/gcc-4.9.3/mingw_32/i686-w64-mingw32/include/c++/complex:44:0, from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/type_traits/is_complex.hpp:12, from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/number.hpp:21, from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/gmp.hpp:9, from gfilogisreg.cpp:1: D:/Compiler/gcc-4.9.3/mingw_32/i686-w64-mingw32/include/c++/cmath:650:5: note: 'std::isnormal' isnormal(_Tp __x) ^ In file included from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/detail/generic_interconvert.hpp:9:0, from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/number.hpp:26, from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/gmp.hpp:9, from gfilogisreg.cpp:1: d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/detail/default_ops.hpp:1930:38: note: 'boost::multiprecision::isnormal' inline BOOST_MP_CXX14_CONSTEXPR bool isnormal BOOST_PREVENT_MACRO_SUBSTITUTION(const multiprecision::number& arg) ^ d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/detail/default_ops.hpp:1935:38: note: 'boost::multiprecision::isnormal' inline BOOST_MP_CXX14_CONSTEXPR bool isnormal BOOST_PREVENT_MACRO_SUBSTITUTION(const multiprecision::detail::expression& arg) ^ gfilogisreg.cpp: In function 'double df(double, const vec&, double, const vec&)': gfilogisreg.cpp:62:25: error: 'isnormal' was not declared in this scope return isnormal(result) ? result : 0.0; ^ gfilogisreg.cpp:62:25: note: suggested alternatives: In file included from D:/Compiler/gcc-4.9.3/mingw_32/i686-w64-mingw32/include/c++/complex:44:0, from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/type_traits/is_complex.hpp:12, from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/number.hpp:21, from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/gmp.hpp:9, from gfilogisreg.cpp:1: D:/Compiler/gcc-4.9.3/mingw_32/i686-w64-mingw32/include/c++/cmath:650:5: note: 'std::isnormal' isnormal(_Tp __x) ^ In file included from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/detail/generic_interconvert.hpp:9:0, from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/number.hpp:26, from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/gmp.hpp:9, from gfilogisreg.cpp:1: d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/detail/default_ops.hpp:1930:38: note: 'boost::multiprecision::isnormal' inline BOOST_MP_CXX14_CONSTEXPR bool isnormal BOOST_PREVENT_MACRO_SUBSTITUTION(const multiprecision::number& arg) ^ d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/detail/default_ops.hpp:1935:38: note: 'boost::multiprecision::isnormal' inline BOOST_MP_CXX14_CONSTEXPR bool isnormal BOOST_PREVENT_MACRO_SUBSTITUTION(const multiprecision::detail::expression& arg) ^ gfilogisreg.cpp: In member function 'virtual double xF::operator()(const vec&)': gfilogisreg.cpp:94:27: error: 'isnormal' was not declared in this scope return isnormal(result) ? result : 0.0; ^ gfilogisreg.cpp:94:27: note: suggested alternatives: In file included from D:/Compiler/gcc-4.9.3/mingw_32/i686-w64-mingw32/include/c++/complex:44:0, from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/type_traits/is_complex.hpp:12, from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/number.hpp:21, from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/gmp.hpp:9, from gfilogisreg.cpp:1: D:/Compiler/gcc-4.9.3/mingw_32/i686-w64-mingw32/include/c++/cmath:650:5: note: 'std::isnormal' isnormal(_Tp __x) ^ In file included from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/detail/generic_interconvert.hpp:9:0, from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/number.hpp:26, from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/gmp.hpp:9, from gfilogisreg.cpp:1: d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/detail/default_ops.hpp:1930:38: note: 'boost::multiprecision::isnormal' inline BOOST_MP_CXX14_CONSTEXPR bool isnormal BOOST_PREVENT_MACRO_SUBSTITUTION(const multiprecision::number& arg) ^ d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/detail/default_ops.hpp:1935:38: note: 'boost::multiprecision::isnormal' inline BOOST_MP_CXX14_CONSTEXPR bool isnormal BOOST_PREVENT_MACRO_SUBSTITUTION(const multiprecision::detail::expression& arg) ^ gfilogisreg.cpp: In member function 'virtual void xF::Gradient(const vec&, arma::vec&)': gfilogisreg.cpp:111:30: error: 'isnormal' was not declared in this scope gr(i) = isnormal(result) ? result : 0.0; ^ gfilogisreg.cpp:111:30: note: suggested alternatives: In file included from D:/Compiler/gcc-4.9.3/mingw_32/i686-w64-mingw32/include/c++/complex:44:0, from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/type_traits/is_complex.hpp:12, from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/number.hpp:21, from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/gmp.hpp:9, from gfilogisreg.cpp:1: D:/Compiler/gcc-4.9.3/mingw_32/i686-w64-mingw32/include/c++/cmath:650:5: note: 'std::isnormal' isnormal(_Tp __x) ^ In file included from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/detail/generic_interconvert.hpp:9:0, from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/number.hpp:26, from d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/gmp.hpp:9, from gfilogisreg.cpp:1: d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/detail/default_ops.hpp:1930:38: note: 'boost::multiprecision::isnormal' inline BOOST_MP_CXX14_CONSTEXPR bool isnormal BOOST_PREVENT_MACRO_SUBSTITUTION(const multiprecision::number& arg) ^ d:/RCompile/CRANpkg/lib/3.6/BH/include/boost/multiprecision/detail/default_ops.hpp:1935:38: note: 'boost::multiprecision::isnormal' inline BOOST_MP_CXX14_CONSTEXPR bool isnormal BOOST_PREVENT_MACRO_SUBSTITUTION(const multiprecision::detail::expression& arg) ^ gfilogisreg.cpp: In function 'Rcpp::CharacterVector vector2q(arma::colvec&)': gfilogisreg.cpp:324:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(auto i = 0; i < x.size(); i++) { ^ gfilogisreg.cpp: In function 'Rcpp::List loop1(Rcpp::List, Rcpp::List, int, const colvec&)': gfilogisreg.cpp:367:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(auto i = 0; i < N; i++) { ^ gfilogisreg.cpp:376:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(auto i = 0; i < N; i++) { ^ gfilogisreg.cpp: In function 'double f(const vec&, const mat&, const vec&)': gfilogisreg.cpp:50:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ gfilogisreg.cpp: In function 'double df(double, const vec&, double, const vec&)': gfilogisreg.cpp:63:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ gfilogisreg.cpp: In member function 'virtual double xF::operator()(const vec&)': gfilogisreg.cpp:95:3: warning: control reaches end of non-void function [-Wreturn-type] } ^ make[1]: *** [gfilogisreg.o] Error 1 make[1]: Leaving directory `/cygdrive/d/temp/RtmpOM84hJ/R.INSTALL2f5c58bf60e2/gfilogisreg/src-i386' ERROR: compilation failed for package 'gfilogisreg' * removing 'd:/Rcompile/CRANpkg/lib/3.6/gfilogisreg'