* using log directory 'd:/Rcompile/CRANpkg/local/3.6/pedbuildr.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'pedbuildr/DESCRIPTION' ... OK
* this is package 'pedbuildr' version '0.2.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'pedbuildr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [10s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking examples ... ERROR
Running examples in 'pedbuildr-Ex.R' failed
The error most likely occurred in:

> ### Name: reconstruct
> ### Title: Pedigree reconstruction
> ### Aliases: reconstruct
> 
> ### ** Examples
> 
> #-----------------
> # Example 1: Trio
> #-----------------
> 
> data(trioData)
> 
> x = as.ped(trioData, locusAttributes = "snp-12")
> summary(x)
List of 3 singletons.
Labels: 1 (male), 2 (male), 3 (male).
100 attached markers.
> 
> res = reconstruct(x, inferPO = TRUE, age = "1 > 2", linearInb = FALSE)
Pairwise estimation:
  PO: 2-2 
  non-PO: 1-2 

Pedigree parameters:
  ID labels: 1, 2, 3
  Sex: 1, 1, 1
  Extra: parents
  Age info: 1>2
  Known PO: 2-2
  Known non-PO: 1-2
  No children: -
  Connected only: TRUE
  Symmetry filter: TRUE
  Linear inbreeding: FALSE

Building pedigree list:
  Undirected adjacency matrices: 4 
  Directed adjacency matrices: 0 
  After adding parents: 0 
  Connected solutions: 0 
Error: Empty pedigree list
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [4s] OK
  Running 'testthat.R' [4s]
* checking PDF version of manual ... OK
* DONE
Status: 1 ERROR