* using log directory 'd:/Rcompile/CRANpkg/local/3.6/stars.Rcheck' * using R version 3.6.3 (2020-02-29) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'stars/DESCRIPTION' ... OK * this is package 'stars' version '0.5-2' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... NOTE Package suggested but not available for checking: 'starsdata' * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'stars' can be installed ... OK * checking installed package size ... NOTE installed size is 8.7Mb sub-directories of 1Mb or more: doc 2.4Mb nc 4.5Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [25s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [71s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [169s] OK Running 'aggregate.R' [5s] Comparing 'aggregate.Rout' to 'aggregate.Rout.save' ...70c70 < file154503aa73588.tif --- > file311327eac9a8d.tif Running 'area.R' [3s] Comparing 'area.Rout' to 'area.Rout.save' ...66a67,84 > /PRODUCT/longitude, > /PRODUCT/latitude, > /PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column, > stars object with 2 dimensions and 1 attribute > attribute(s): > area [m^2] > Min. : 25990150 > 1st Qu.: 28050933 > Median : 35705689 > Mean : 42968454 > 3rd Qu.: 54640139 > Max. :101184840 > dimension(s): > from to offset delta refsys point values x/y > x 1 450 NA NA WGS 84 NA [450x278] -5.81066 [°],...,30.9468 [°] [x] > y 1 278 NA NA WGS 84 NA [450x278] 28.3605 [°],...,51.4686 [°] [y] > curvilinear grid > There were 15 warnings (use warnings() to see them) Running 'crop.R' [8s] Comparing 'crop.Rout' to 'crop.Rout.save' ... OK Running 'curvilinear.R' [2s] Comparing 'curvilinear.Rout' to 'curvilinear.Rout.save' ...54a55,96 > /PRODUCT/longitude, > /PRODUCT/latitude, > /PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column, > stars object with 3 dimensions and 1 attribute > attribute(s): > nitrogendioxide_summed_total_column > Min. :0e+00 > 1st Qu.:1e-04 > Median :1e-04 > Mean :1e-04 > 3rd Qu.:1e-04 > Max. :5e-04 > NA's :330 > dimension(s): > from to offset delta refsys point values > x 1 450 NA NA WGS 84 NA [450x278] -5.81066 [°],...,30.9468 [°] > y 1 278 NA NA WGS 84 NA [450x278] 28.3605 [°],...,51.4686 [°] > time 1 1 NA NA NA NA NULL > x/y > x [x] > y [y] > time > curvilinear grid > stars object with 3 dimensions and 1 attribute > attribute(s): > nitrogendioxide_summed_total_column > Min. :0.00005 > 1st Qu.:0.00008 > Median :0.00008 > Mean :0.00009 > 3rd Qu.:0.00009 > Max. :0.00023 > NA's :37 > dimension(s): > from to offset delta refsys point values x/y > x 1 57 NA NA WGS 84 NA [57x35] -5.81066 [°],...,30.8108 [°] [x] > y 1 35 NA NA WGS 84 NA [57x35] 28.6622 [°],...,51.4679 [°] [y] > time 1 1 NA NA NA NA NULL > curvilinear grid > null device > 1 > There were 15 warnings (use warnings() to see them) Running 'dimensions.R' [5s] Comparing 'dimensions.Rout' to 'dimensions.Rout.save' ...7,19d6 < Warning messages: < 1: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 2: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 3: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 4: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 5: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 6: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". Running 'extract.R' [2s] Comparing 'extract.Rout' to 'extract.Rout.save' ... OK Running 'gridtypes.R' [3s] Comparing 'gridtypes.Rout' to 'gridtypes.Rout.save' ... OK Running 'nc.R' [3s] Comparing 'nc.Rout' to 'nc.Rout.save' ... OK Running 'plot.R' [5s] Comparing 'plot.Rout' to 'plot.Rout.save' ... OK Running 'predict.R' [9s] Comparing 'predict.Rout' to 'predict.Rout.save' ... OK Running 'proxy.R' [14s] Comparing 'proxy.Rout' to 'proxy.Rout.save' ...291a292,381 > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > stars_proxy object with 2 attributes in 18 file(s): > $sst > [1] "[...]/avhrr-only-v2.19810901.nc:sst" "[...]/avhrr-only-v2.19810902.nc:sst" > [3] "[...]/avhrr-only-v2.19810903.nc:sst" "[...]/avhrr-only-v2.19810904.nc:sst" > [5] "[...]/avhrr-only-v2.19810905.nc:sst" "[...]/avhrr-only-v2.19810906.nc:sst" > [7] "[...]/avhrr-only-v2.19810907.nc:sst" "[...]/avhrr-only-v2.19810908.nc:sst" > [9] "[...]/avhrr-only-v2.19810909.nc:sst" > > $anom > [1] "[...]/avhrr-only-v2.19810901.nc:anom" > [2] "[...]/avhrr-only-v2.19810902.nc:anom" > [3] "[...]/avhrr-only-v2.19810903.nc:anom" > [4] "[...]/avhrr-only-v2.19810904.nc:anom" > [5] "[...]/avhrr-only-v2.19810905.nc:anom" > [6] "[...]/avhrr-only-v2.19810906.nc:anom" > [7] "[...]/avhrr-only-v2.19810907.nc:anom" > [8] "[...]/avhrr-only-v2.19810908.nc:anom" > [9] "[...]/avhrr-only-v2.19810909.nc:anom" > > dimension(s): > from to offset delta refsys point values x/y > x 1 1440 0 0.25 NA NA NULL [x] > y 1 720 90 -0.25 NA NA NULL [y] > zlev 1 1 0 [m] NA NA NA NULL > time 1 9 1981-09-01 UTC 1 days POSIXct NA NULL > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > stars object with 4 dimensions and 2 attributes > attribute(s), summary of first 1e+05 cells: > sst [C*°] anom [C*°] > Min. :-1.80 Min. :-4.69 > 1st Qu.:-1.19 1st Qu.:-0.06 > Median :-1.05 Median : 0.52 > Mean :-0.32 Mean : 0.23 > 3rd Qu.:-0.20 3rd Qu.: 0.71 > Max. : 9.36 Max. : 3.70 > NA's :13360 NA's :13360 > dimension(s): > from to offset delta refsys point values x/y > x 1 1440 0 0.25 NA NA NULL [x] > y 1 720 90 -0.25 NA NA NULL [y] > zlev 1 1 0 [m] NA NA NA NULL > time 1 9 1981-09-01 UTC 1 days POSIXct NA NULL > stars object with 5 dimensions and 1 attribute > attribute(s), summary of first 1e+05 cells: > sst.anom > Min. :-1.80 > 1st Qu.:-1.19 > Median :-1.05 > Mean :-0.32 > 3rd Qu.:-0.20 > Max. : 9.36 > NA's :13360 > dimension(s): > from to offset delta refsys point values x/y > x 1 1440 0 0.25 NA NA NULL [x] > y 1 720 90 -0.25 NA NA NULL [y] > zlev 1 1 0 [m] NA NA NA NULL > time 1 9 1981-09-01 UTC 1 days POSIXct NA NULL > new_dim 1 2 NA NA NA NA sst , anom > Error in c.stars_proxy(l[[1]], l[[2]], l[[3]], along = list(times = as.Date("1981-09-01") + : > for proxy objects, along argument as list is not implemented > stars_proxy object with 1 attribute in 2 file(s): > $sst.anom > [1] "[...]/avhrr-only-v2.19810901.nc:sst" > [2] "[...]/avhrr-only-v2.19810901.nc:anom" > > dimension(s): > from to offset delta refsys point values x/y > x 1 1440 0 0.25 NA NA NULL [x] > y 1 720 90 -0.25 NA NA NULL [y] > zlev 1 1 0 [m] NA NA NA NULL > time 1 1 1981-09-01 UTC NA POSIXct NA NULL > times 1 2 1981-09-01 1 days Date NA NULL Running 'raster.R' [8s] Comparing 'raster.Rout' to 'raster.Rout.save' ...85c85 < source : L7_ETMs.tif --- > source : /home/edzer/git/stars.Rcheck/stars/tif/L7_ETMs.tif Running 'rasterize.R' [3s] Comparing 'rasterize.Rout' to 'rasterize.Rout.save' ... OK Running 'rectilinear.R' [4s] Comparing 'rectilinear.Rout' to 'rectilinear.Rout.save' ... OK Running 'redimension.R' [5s] Comparing 'redimension.Rout' to 'redimension.Rout.save' ... OK Running 'sf.R' [5s] Comparing 'sf.Rout' to 'sf.Rout.save' ... OK Running 'sp.R' [3s] Comparing 'sp.Rout' to 'sp.Rout.save' ... OK Running 'spacetime.R' [4s] Comparing 'spacetime.Rout' to 'spacetime.Rout.save' ...237,238c237,238 < [1] ID 1 ID 2 ID 3 ID 4 ID 5 ID 6 ID 7 ID 8 ID 9 ID 10 ID 11 ID 12 < Levels: ID 1 ID 10 ID 11 ID 12 ID 2 ID 3 ID 4 ID 5 ID 6 ID 7 ID 8 ID 9 --- > [1] "ID 1" "ID 2" "ID 3" "ID 4" "ID 5" "ID 6" "ID 7" "ID 8" "ID 9" > [10] "ID 10" "ID 11" "ID 12" 287,292c287 < [1] "Attributes: < Component \"data\": Component \"ID\": Modes: character, numeric >" < [2] "Attributes: < Component \"data\": Component \"ID\": Attributes: < target is NULL, current is list > >" < [3] "Attributes: < Component \"data\": Component \"ID\": target is character, current is factor >" < [4] "Attributes: < Component \"data\": Component \"NewID\": Modes: character, numeric >" < [5] "Attributes: < Component \"data\": Component \"NewID\": Attributes: < target is NULL, current is list > >" < [6] "Attributes: < Component \"data\": Component \"NewID\": target is character, current is factor >" --- > [1] TRUE Running 'spatstat.R' [5s] Comparing 'spatstat.Rout' to 'spatstat.Rout.save' ... OK Running 'stars.R' [20s] Comparing 'stars.Rout' to 'stars.Rout.save' ...322c322 < 4 1841005 1143985 --- > 4 1841004 1143985 326c326 < 8 1841011 1143965 --- > 8 1841010 1143965 347,351d346 < Warning messages: < 1: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 2: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". 433,453d427 < Warning messages: < 1: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 2: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 3: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 4: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 5: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 6: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 7: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 8: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 9: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 10: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". 457c431 < sst [°C] anom [°C] err [°C] ice [percent] --- > sst [°C] anom [°C] err [°C] ice [percent] 633a608,647 > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > stars object with 4 dimensions and 2 attributes > attribute(s), summary of first 1e+05 cells: > sst [C*°] anom [C*°] > Min. :-1.80 Min. :-4.69 > 1st Qu.:-1.19 1st Qu.:-0.06 > Median :-1.05 Median : 0.52 > Mean :-0.32 Mean : 0.23 > 3rd Qu.:-0.20 3rd Qu.: 0.71 > Max. : 9.36 Max. : 3.70 > NA's :13360 NA's :13360 > dimension(s): > from to offset delta refsys point values x/y > x 1 1440 0 0.25 NA NA NULL [x] > y 1 720 90 -0.25 NA NA NULL [y] > zlev 1 1 0 [m] NA NA NA NULL > time 1 9 1981-09-01 UTC 1 days POSIXct NA NULL > stars object with 3 dimensions and 2 attributes > attribute(s), summary of first 1e+05 cells: > sst [C*°] anom [C*°] > Min. :-1.80 Min. :-4.69 > 1st Qu.:-1.19 1st Qu.:-0.06 > Median :-1.05 Median : 0.52 > Mean :-0.32 Mean : 0.23 > 3rd Qu.:-0.20 3rd Qu.: 0.71 > Max. : 9.36 Max. : 3.70 > NA's :13360 NA's :13360 > dimension(s): > from to offset delta refsys point values x/y > x 1 1440 0 0.25 NA NA NULL [x] > y 1 720 90 -0.25 NA NA NULL [y] > times 1 3 1981-09-01 1 days Date NA NULL Running 'subset.R' [5s] Comparing 'subset.Rout' to 'subset.Rout.save' ... OK Running 'testthat.R' [23s] Comparing 'testthat.Rout' to 'testthat.Rout.save' ...9d8 < [ FAIL 0 | WARN 10 | SKIP 0 | PASS 100 ] Running 'tidy.R' [15s] Comparing 'tidy.Rout' to 'tidy.Rout.save' ... OK Running 'transform.R' [3s] Comparing 'transform.Rout' to 'transform.Rout.save' ... OK Running 'warp.R' [3s] Comparing 'warp.Rout' to 'warp.Rout.save' ... OK Running 'write.R' [4s] Comparing 'write.Rout' to 'write.Rout.save' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [70s] OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs