* using log directory 'd:/Rcompile/CRANpkg/local/3.6/wildlifeDI.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'wildlifeDI/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'wildlifeDI' version '0.4.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'wildlifeDI' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [12s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [37s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [184s] WARNING
Error(s) in re-building vignettes:
--- re-building 'wildlifeDI-vignette-contact_analysis.Rmd' using rmarkdown
Loading required package: sp
Loading required package: ade4
Loading required package: adehabitatMA
Loading required package: CircStats
Loading required package: MASS
Loading required package: boot
Linking to GEOS 3.9.0, GDAL 3.2.1, PROJ 7.2.1
Quitting from lines 133-140 (wildlifeDI-vignette-contact_analysis.Rmd) 
Error: processing vignette 'wildlifeDI-vignette-contact_analysis.Rmd' failed with diagnostics:
Problem with `summarise()` column `id`.
i `id = min(id)`.
x 'min' not meaningful for factors
i The error occurred in group 1: contact_pha = 1.
--- failed re-building 'wildlifeDI-vignette-contact_analysis.Rmd'

--- re-building 'wildlifeDI-vignette.rmd' using rmarkdown
Loading required package: sp
Loading required package: deldir
deldir 0.2-10      Nickname: "Morpheus and Euripides"

     Note 1: As of version 0.2-1, error handling in this 
     package was amended to conform to the usual R protocol. 
     The deldir() function now actually throws an error 
     when one occurs, rather than displaying an error number 
     and returning a NULL.
 
     Note 2:  As of version 0.1-29 the arguments "col" 
     and "lty" of plot.deldir() had their names changed to 
     "cmpnt_col" and "cmpnt_lty" respectively basically 
     to allow "col" and and "lty" to be passed as "..." 
     arguments.
 
     Note 3: As of version 0.1-29 the "plotit" argument 
     of deldir() was changed to (simply) "plot".
 
     See the help for deldir() and plot.deldir().

Loading required package: ade4
Loading required package: adehabitatMA
Loading required package: adehabitatLT
Loading required package: CircStats
Loading required package: MASS
Loading required package: boot
rgeos version: 0.5-5, (SVN revision 640)
 GEOS runtime version: 3.8.0-CAPI-1.13.1 
 Linking to sp version: 1.4-5 
 Polygon checking: TRUE 

--- finished re-building 'wildlifeDI-vignette.rmd'

SUMMARY: processing the following file failed:
  'wildlifeDI-vignette-contact_analysis.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING