Last updated on 2022-08-15 08:49:58 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1 | 8.96 | 75.01 | 83.97 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1 | 7.49 | 57.12 | 64.61 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1 | 112.14 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1 | 107.39 | OK | |||
| r-devel-windows-x86_64 | 1.1 | 17.00 | 93.00 | 110.00 | ERROR | |
| r-patched-linux-x86_64 | 1.1 | 6.76 | 70.86 | 77.62 | OK | |
| r-release-linux-x86_64 | 1.1 | 8.00 | 70.59 | 78.59 | OK | |
| r-release-macos-arm64 | 1.1 | 30.00 | OK | |||
| r-release-macos-x86_64 | 1.1 | 44.00 | OK | |||
| r-release-windows-x86_64 | 1.1 | 15.00 | 95.00 | 110.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.1 | 38.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.1 | 65.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 1.1 | 18.00 | 91.00 | 109.00 | ERROR |
Version: 1.1
Check: examples
Result: ERROR
Running examples in 'idmTPreg-Ex.R' failed
The error most likely occurred in:
> ### Name: TPreg
> ### Title: Regression Modeling of Transition Probabilities in a Progressive
> ### Illness-Death Model
> ### Aliases: TPreg
>
> ### ** Examples
>
> data(colonTPreg)
>
> co11 <- TPreg( ~ Age + Nodes + treatment, colonTPreg, link = "logit", s = 50, R = 19, t = 200,
+ trans = "11", ncores = 1)
Warning in TPreg(~Age + Nodes + treatment, colonTPreg, link = "logit", s = 50, :
Nodes variable in 'data' has missing value(s),
Warning in model.matrix.default(mt, mf, contrasts) :
non-list contrasts argument ignored
> co11
Call:
TPreg(formula = ~Age + Nodes + treatment, data = colonTPreg,
link = "logit", s = 50, t = 200, R = 19, trans = "11", ncores = 1)
Transition:
[1] "11"
(s,t):
[1] 50 200
Coefficients:
Estimate St.Err LW.L UP.L P.value
X.Intercept. 2.492609419 0.473944860 1.56367749 3.421541344 1.446194e-07
Age -0.005980971 0.006589688 -0.01889676 0.006934818 3.640760e-01
Nodes -0.074748098 0.028546134 -0.13069852 -0.018797675 8.831687e-03
treatmentLev 0.039682347 0.249967705 -0.45025436 0.529619049 8.738659e-01
treatmentLev.5FU 0.929566117 0.297014755 0.34741720 1.511715037 1.749868e-03
[1] "18 observations deleted due to missingness from 'data'"
> summary(co11)
Call:
TPreg(formula = ~Age + Nodes + treatment, data = colonTPreg,
link = "logit", s = 50, t = 200, R = 19, trans = "11", ncores = 1)
(s,t):
[1] 50 200
Transition 11 :
Coefficients:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 45.793521 -0.401888881 6.26264521 -18.53823536 3.1044597
2 185 2.636107 -0.007185251 -0.07924264 0.10143607 1.0470649
3 200 2.492609 -0.005980971 -0.07474810 0.03968235 0.9295661
Standard Errors:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 2.695167e+11 3.612147607 14.89612245 2.695167e+11 2.695167e+11
2 185 8.314327e-01 0.014520568 0.02565680 1.971479e-01 4.103197e-01
3 200 4.739449e-01 0.006589688 0.02854613 2.499677e-01 2.970148e-01
Lower limit:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 -5.282528e+11 -7.48169819 -22.9337548 -5.282528e+11 -5.282528e+11
2 185 1.006499e+00 -0.03564556 -0.1295300 -2.849738e-01 2.428383e-01
3 200 1.563677e+00 -0.01889676 -0.1306985 -4.502544e-01 3.474172e-01
Upper limit:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 5.282528e+11 6.677920428 35.45904522 5.282528e+11 5.282528e+11
2 185 4.265715e+00 0.021275061 -0.02895532 4.878459e-01 1.851291e+00
3 200 3.421541e+00 0.006934818 -0.01879768 5.296190e-01 1.511715e+00
p.value:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 1.000000e+00 0.9114099 0.674177807 1.0000000 1.000000000
2 185 1.521458e-03 0.6207182 0.002011268 0.6068901 0.010715966
3 200 1.446194e-07 0.3640760 0.008831687 0.8738659 0.001749868
[1] "18 observation(s) deleted due to missingness from 'data'"
>
>
>
> cleanEx()
Error: connections left open:
<-CRANWIN2.fb05.statistik.uni-dortmund.de:11816 (sockconn)
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.1
Check: examples
Result: ERROR
Running examples in 'idmTPreg-Ex.R' failed
The error most likely occurred in:
> ### Name: TPreg
> ### Title: Regression Modeling of Transition Probabilities in a Progressive
> ### Illness-Death Model
> ### Aliases: TPreg
>
> ### ** Examples
>
> data(colonTPreg)
>
> co11 <- TPreg( ~ Age + Nodes + treatment, colonTPreg, link = "logit", s = 50, R = 19, t = 200,
+ trans = "11", ncores = 1)
Warning in TPreg(~Age + Nodes + treatment, colonTPreg, link = "logit", s = 50, :
Nodes variable in 'data' has missing value(s),
Warning in model.matrix.default(mt, mf, contrasts) :
non-list contrasts argument ignored
> co11
Call:
TPreg(formula = ~Age + Nodes + treatment, data = colonTPreg,
link = "logit", s = 50, t = 200, R = 19, trans = "11", ncores = 1)
Transition:
[1] "11"
(s,t):
[1] 50 200
Coefficients:
Estimate St.Err LW.L UP.L P.value
X.Intercept. 2.492609419 1.01960264 0.49418825 4.49103058 0.01449779
Age -0.005980971 0.01517786 -0.03572957 0.02376763 0.69353752
Nodes -0.074748098 0.02932947 -0.13223387 -0.01726233 0.01081669
treatmentLev 0.039682347 0.25191654 -0.45407407 0.53343877 0.87483363
treatmentLev.5FU 0.929566117 0.37673239 0.19117063 1.66796160 0.01360815
[1] "18 observations deleted due to missingness from 'data'"
> summary(co11)
Call:
TPreg(formula = ~Age + Nodes + treatment, data = colonTPreg,
link = "logit", s = 50, t = 200, R = 19, trans = "11", ncores = 1)
(s,t):
[1] 50 200
Transition 11 :
Coefficients:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 -895.023387 -0.401888881 6.26264521 922.27867219 943.9213673
2 185 2.636107 -0.007185251 -0.07924264 0.10143607 1.0470649
3 200 2.492609 -0.005980971 -0.07474810 0.03968235 0.9295661
Standard Errors:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 1.251236e+11 6.26149943 36.04430022 1.251236e+11 1.251236e+11
2 185 7.543116e-01 0.01195671 0.03251933 2.405429e-01 3.363748e-01
3 200 1.019603e+00 0.01517786 0.02932947 2.519165e-01 3.767324e-01
Lower limit:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 -2.452423e+11 -12.67442776 -64.3841832 -2.452423e+11 -2.452423e+11
2 185 1.157656e+00 -0.03062039 -0.1429805 -3.700280e-01 3.877703e-01
3 200 4.941883e-01 -0.03572957 -0.1322339 -4.540741e-01 1.911706e-01
Upper limit:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 2.452423e+11 11.87065000 76.90947364 2.452423e+11 2.452423e+11
2 185 4.114558e+00 0.01624989 -0.01550476 5.729001e-01 1.706359e+00
3 200 4.491031e+00 0.02376763 -0.01726233 5.334388e-01 1.667962e+00
p.value:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 0.9999999943 0.9488236 0.86206307 1.0000000 0.999999994
2 185 0.0004745618 0.5478806 0.01481845 0.6732466 0.001853263
3 200 0.0144977857 0.6935375 0.01081669 0.8748336 0.013608147
[1] "18 observation(s) deleted due to missingness from 'data'"
>
>
>
> cleanEx()
Error: connections left open:
<-CRANWIN2.fb05.statistik.uni-dortmund.de:11152 (sockconn)
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.1
Check: examples
Result: ERROR
Running examples in 'idmTPreg-Ex.R' failed
The error most likely occurred in:
> ### Name: TPreg
> ### Title: Regression Modeling of Transition Probabilities in a Progressive
> ### Illness-Death Model
> ### Aliases: TPreg
>
> ### ** Examples
>
> data(colonTPreg)
>
> co11 <- TPreg( ~ Age + Nodes + treatment, colonTPreg, link = "logit", s = 50, R = 19, t = 200,
+ trans = "11", ncores = 1)
Warning in TPreg(~Age + Nodes + treatment, colonTPreg, link = "logit", s = 50, :
Nodes variable in 'data' has missing value(s),
Warning in model.matrix.default(mt, mf, contrasts) :
non-list contrasts argument ignored
> co11
Call:
TPreg(formula = ~Age + Nodes + treatment, data = colonTPreg,
link = "logit", s = 50, t = 200, R = 19, trans = "11", ncores = 1)
Transition:
[1] "11"
(s,t):
[1] 50 200
Coefficients:
Estimate St.Err LW.L UP.L P.value
X.Intercept. 2.492609419 1.15873013 0.22149836 4.76372048 0.03146388
Age -0.005980971 0.01797629 -0.04121451 0.02925257 0.73934992
Nodes -0.074748098 0.03116910 -0.13583954 -0.01365665 0.01647824
treatmentLev 0.039682347 0.31630633 -0.58027807 0.65964276 0.90016301
treatmentLev.5FU 0.929566117 0.44703766 0.05337230 1.80575993 0.03758142
[1] "18 observations deleted due to missingness from 'data'"
> summary(co11)
Call:
TPreg(formula = ~Age + Nodes + treatment, data = colonTPreg,
link = "logit", s = 50, t = 200, R = 19, trans = "11", ncores = 1)
(s,t):
[1] 50 200
Transition 11 :
Coefficients:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 -895.023387 -0.401888881 6.26264521 922.27867219 943.9213673
2 185 2.636107 -0.007185251 -0.07924264 0.10143607 1.0470649
3 200 2.492609 -0.005980971 -0.07474810 0.03968235 0.9295661
Standard Errors:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 6.546042e+10 3.60350755 18.50221540 6.546042e+10 6.546042e+10
2 185 9.470586e-01 0.01465992 0.03050941 2.677623e-01 4.317283e-01
3 200 1.158730e+00 0.01797629 0.03116910 3.163063e-01 4.470377e-01
Lower limit:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 -1.283024e+11 -7.46476369 -30.0016970 -1.283024e+11 -1.283024e+11
2 185 7.798720e-01 -0.03591870 -0.1390411 -4.233781e-01 2.008774e-01
3 200 2.214984e-01 -0.04121451 -0.1358395 -5.802781e-01 5.337230e-02
Upper limit:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 1.283024e+11 6.66098592 42.52698740 1.283024e+11 1.283024e+11
2 185 4.492342e+00 0.02154820 -0.01944420 6.262503e-01 1.893252e+00
3 200 4.763720e+00 0.02925257 -0.01365665 6.596428e-01 1.805760e+00
p.value:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 0.999999989 0.9111983 0.735000872 1.000000 0.99999999
2 185 0.005378124 0.6240427 0.009395489 0.704815 0.01529630
3 200 0.031463879 0.7393499 0.016478243 0.900163 0.03758142
[1] "18 observation(s) deleted due to missingness from 'data'"
>
>
>
> cleanEx()
Error: connections left open:
<-CRANwin.fb05.statistik.uni-dortmund.de:11046 (sockconn)
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64