Last updated on 2022-08-15 08:50:05 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.3 | 60.30 | 52.81 | 113.11 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.3 | 48.70 | 40.34 | 89.04 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.3 | 162.54 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.3 | 151.23 | OK | |||
| r-devel-windows-x86_64 | 1.0.3 | 122.00 | 0.00 | 122.00 | FAIL | |
| r-patched-linux-x86_64 | 1.0.3 | 53.04 | 49.29 | 102.33 | OK | |
| r-release-linux-x86_64 | 1.0.3 | 50.95 | 49.93 | 100.88 | OK | |
| r-release-macos-arm64 | 1.0.3 | 40.00 | NOTE | |||
| r-release-macos-x86_64 | 1.0.3 | 56.00 | OK | |||
| r-release-windows-x86_64 | 1.0.3 | 61.00 | 0.00 | 61.00 | FAIL | |
| r-oldrel-macos-arm64 | 1.0.3 | 40.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.3 | 55.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 1.0.3 | 144.00 | 169.00 | 313.00 | OK |
Version: 1.0.3
Check: examples
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
>
> infile <- system.file("extdata", "hmp50.bz2", package = "rbiom")
> biom <- read.biom(infile)
> range(slam::col_sums(biom$counts))
[1] 182 22117
>
> biom <- rarefy(biom, depth=1000)
> range(slam::col_sums(biom$counts))
[1] 1000 1000
>
>
>
>
> cleanEx()
> nameEx("read.biom")
> ### * read.biom
>
> flush(stderr()); flush(stdout())
>
> ### Name: read.biom
> ### Title: Extracts counts, metadata, taxonomy, and phylogeny from a biom
> ### file.
> ### Aliases: read.biom
>
> ### ** Examples
>
> library(rbiom)
>
> infile <- system.file("extdata", "hmp50.bz2", package = "rbiom")
> biom <- read.biom(infile)
======== End of example output (where/before crash/hang up occured ?) ========
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64
Version: 1.0.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘rhdf5’
Flavor: r-release-macos-arm64