ACDC: Analysis of Congruent Diversification Classes
Features tools for exploring congruent phylogenetic birth-death models. It can construct the pulled speciation- and net-diversification rates from a reference model. Given alternative speciation- or extinction rates, it can construct new models that are congruent with the reference model. Functionality is included to sample new rate functions, and to visualize the distribution of one congruence class. See also Louca & Pennell (2020) <doi:10.1038/s41586-020-2176-1>.
| Version: |
1.0.0 |
| Depends: |
R (≥ 3.5.0), ggplot2 |
| Imports: |
magrittr, deSolve, dplyr, tibble, colorspace, patchwork, latex2exp, tidyr |
| Suggests: |
knitr, rmarkdown, ape |
| Published: |
2022-01-12 |
| Author: |
Bjørn Tore Kopperud [aut, cre],
Sebastian Höhna [aut],
Andrew F. Magee [aut] |
| Maintainer: |
Bjørn Tore Kopperud <kopperud at protonmail.com> |
| License: |
GPL-3 |
| URL: |
https://github.com/afmagee/ACDC |
| NeedsCompilation: |
no |
| Materials: |
README NEWS |
| CRAN checks: |
ACDC results |
Documentation:
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