Provides accurate cell type proportion estimation by incorporating covariance structure in both single-cell and bulk RNA-seq datasets into the analysis. For more detail, see Karimnezhad, A. (2022) <doi:10.1101/2022.05.13.491858>.
| Version: | 1.0.3 |
| Depends: | R (≥ 4.0) |
| Imports: | nlshrink, limSolve, Biobase, BisqueRNA, methods, plyr, Seurat, MAST |
| Suggests: | testthat (≥ 3.0.0) |
| Published: | 2022-06-24 |
| Author: | Ali Karimnezhad [aut, cre, ctb] |
| Maintainer: | Ali Karimnezhad <ali.karimnezhad at gmail.com> |
| BugReports: | https://github.com/empiricalbayes/CSCDRNA/issues |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | CSCDRNA results |
| Reference manual: | CSCDRNA.pdf |
| Package source: | CSCDRNA_1.0.3.tar.gz |
| Windows binaries: | r-devel: CSCDRNA_1.0.3.zip, r-release: CSCDRNA_1.0.3.zip, r-oldrel: CSCDRNA_1.0.3.zip |
| macOS binaries: | r-release (arm64): CSCDRNA_1.0.3.tgz, r-oldrel (arm64): CSCDRNA_1.0.3.tgz, r-release (x86_64): CSCDRNA_1.0.3.tgz, r-oldrel (x86_64): CSCDRNA_1.0.3.tgz |
| Old sources: | CSCDRNA archive |
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