DMRMark: DMR Detection by Non-Homogeneous Hidden Markov Model from Methylation Array Data

Perform differential analysis for methylation array data. Detect differentially methylated regions (DMRs) from array M-values. The core is a Non-homogeneous Hidden Markov Model for estimating spatial correlation and a novel Constrained Gaussian Mixture Model for modeling the M-value pairs of each individual locus.

Version:	1.1.1
Depends:	MCMCpack, mvtnorm, ellipse
Published:	2017-04-21
Author:	Linghao SHEN
Maintainer:	Linghao SHEN <sl013 at ie.cuhk.edu.hk>
License:	GPL-2 | GPL-3 [expanded from: GPL]
NeedsCompilation:	no
CRAN checks:	DMRMark results

Documentation:

Reference manual:

DMRMark.pdf

Downloads:

Package source:	DMRMark_1.1.1.tar.gz
Windows binaries:	r-devel: DMRMark_1.1.1.zip, r-release: DMRMark_1.1.1.zip, r-oldrel: DMRMark_1.1.1.zip
macOS binaries:	r-release (arm64): DMRMark_1.1.1.tgz, r-oldrel (arm64): DMRMark_1.1.1.tgz, r-release (x86_64): DMRMark_1.1.1.tgz, r-oldrel (x86_64): DMRMark_1.1.1.tgz
Old sources:	DMRMark archive

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