Estimates the time-varying reproduction number, rate of spread,
and doubling time using a range of open-source tools (Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>),
and current best practices (Gostic et al. (2020) <doi:10.1101/2020.06.18.20134858>).
It aims to help users avoid some of the limitations of naive implementations in a framework
that is informed by community feedback and is under active development.
| Version: |
1.3.2 |
| Depends: |
R (≥ 3.4.0) |
| Imports: |
cowplot, data.table, futile.logger (≥ 1.4), future, future.apply, ggplot2, lubridate, methods, patchwork, progressr, purrr, R.utils (≥ 2.0.0), Rcpp (≥ 0.12.0), rlang (≥ 0.4.7), rstan (≥ 2.21.1), runner, scales, stats, truncnorm, lifecycle, utils |
| LinkingTo: |
BH (≥ 1.66.0), Rcpp (≥ 0.12.0), RcppEigen (≥ 0.3.3.3.0), rstan (≥ 2.21.1), StanHeaders (≥ 2.21.0-5) |
| Suggests: |
countrycode, dplyr, EpiSoon, forecastHybrid, here, kableExtra, knitr, magrittr, rmarkdown, rnaturalearth, rstantools, spelling, tidyr, testthat, covr |
| Published: |
2020-12-14 |
| Author: |
Sam Abbott  [aut,
cre],
Joel Hellewell
[aut],
Katharine Sherratt [aut],
Katelyn Gostic [aut],
Joe Hickson [aut],
Hamada S. Badr
[aut],
Michael DeWitt
[aut],
Robin Thompson [aut],
Sophie Meakin [ctb],
James Munday [ctb],
Nikos Bosse [ctb],
Paul Mee [ctb],
Peter Ellis [ctb],
EpiForecasts [aut],
Sebastian Funk [aut] |
| Maintainer: |
Sam Abbott <sam.abbott at lshtm.ac.uk> |
| BugReports: |
https://github.com/epiforecasts/EpiNow2/issues |
| License: |
MIT + file LICENSE |
| URL: |
https:/epiforecasts.io/EpiNow2/,
https:/epiforecasts.io/EpiNow2/dev/,
https://github.com/epiforecasts/EpiNow2 |
| NeedsCompilation: |
yes |
| Additional_repositories: |
https://epiforecasts.io/drat/ |
| Language: |
en-GB |
| Citation: |
EpiNow2 citation info |
| Materials: |
README NEWS |
| CRAN checks: |
EpiNow2 results |