A population genetic simulator, which is able to generate synthetic datasets for single-nucleotide polymorphisms (SNP) for multiple populations. The genetic distances among populations can be set according to the Fixation Index (Fst) as explained in Balding and Nichols (1995) <doi:10.1007/BF01441146>. This tool is able to simulate outlying individuals and missing SNPs can be specified. For Genome-wide association study (GWAS), disease status can be set in desired level according risk ratio.
| Version: | 1.1.2 |
| Depends: | R (≥ 3.2.4) |
| Imports: | KRIS (≥ 1.1.1), rARPACK, grDevices, stats, utils |
| Suggests: | testthat |
| Published: | 2021-01-25 |
| Author: | Kridsadakorn Chaichoompu [aut, cre], Kristel Van Steen [aut], Fentaw Abegaz [aut] |
| Maintainer: | Kridsadakorn Chaichoompu <kridsadakorn at biostatgen.org> |
| BugReports: | https://gitlab.com/kris.ccp/filest/-/issues |
| License: | MIT + file LICENSE |
| URL: | https://gitlab.com/kris.ccp/filest |
| NeedsCompilation: | no |
| Citation: | FILEST citation info |
| Materials: | README NEWS |
| In views: | MissingData |
| CRAN checks: | FILEST results |
| Reference manual: | FILEST.pdf |
| Package source: | FILEST_1.1.2.tar.gz |
| Windows binaries: | r-devel: FILEST_1.1.2.zip, r-release: FILEST_1.1.2.zip, r-oldrel: FILEST_1.1.2.zip |
| macOS binaries: | r-release (arm64): FILEST_1.1.2.tgz, r-oldrel (arm64): FILEST_1.1.2.tgz, r-release (x86_64): FILEST_1.1.2.tgz, r-oldrel (x86_64): FILEST_1.1.2.tgz |
| Old sources: | FILEST archive |
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