LDheatmap: Graphical Display of Pairwise Linkage Disequilibria Between SNPs
Produces a graphical display, as a heat map, of measures
of pairwise linkage disequilibria between single nucleotide polymorphisms (SNPs). Users may
optionally include the physical locations or genetic map
distances of each SNP on the plot. The methods are described in
Shin et al. (2006) <doi:10.18637/jss.v016.c03>. Users should note that the
imported package 'snpStats' and the suggested packages
'rtracklayer', 'GenomicRanges', 'GenomInfoDb' and 'IRanges' are all
BioConductor packages <https://bioconductor.org>.
| Version: |
1.0-6 |
| Depends: |
R (≥ 4.0) |
| Imports: |
grid, genetics, snpStats, Rcpp |
| LinkingTo: |
Rcpp |
| Suggests: |
rtracklayer, GenomicRanges, GenomeInfoDb, IRanges, lattice, ggplot2, vcfR, RColorBrewer |
| Published: |
2022-04-24 |
| Author: |
Ji-Hyung Shin [aut],
Sigal Blay [aut],
Nicholas Lewin-Koh [ctb],
Brad McNeney [aut, cre],
Gloria Yang [ctb],
Matthew Reyers [ctb],
Youwei Yan [ctb],
Jinko Graham [aut] |
| Maintainer: |
Brad McNeney <mcneney at sfu.ca> |
| License: |
GPL-3 |
| URL: |
https://sfustatgen.github.io/LDheatmap/ |
| NeedsCompilation: |
yes |
| Citation: |
LDheatmap citation info |
| Materials: |
ChangeLog |
| CRAN checks: |
LDheatmap results |
Documentation:
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