Visualizes the coverage depth of a complete plastid genome as well as the equality of its inverted repeat regions in relation to the circular, quadripartite genome structure and the location of individual genes. For more information, please see Gruenstaeudl and Jenke (2020) <doi:10.1186/s12859-020-3475-0>.
| Version: | 0.9.4 |
| Depends: | R (≥ 3.3.0) |
| Imports: | RCircos (≥ 1.2.0), optparse (≥ 1.6.0), genbankr (≥ 1.2.1), BiocGenerics (≥ 0.20.0), Biostrings (≥ 2.48.0), GenomicAlignments (≥ 1.18.1), GenomicRanges, IRanges |
| Published: | 2020-11-22 |
| Author: | Michael Gruenstaeudl [aut, cre], Nils Jenke [ctb] |
| Maintainer: | Michael Gruenstaeudl <m.gruenstaeudl at fu-berlin.de> |
| License: | BSD 3-clause License + file LICENSE |
| NeedsCompilation: | no |
| Citation: | PACVr citation info |
| CRAN checks: | PACVr results |
| Reference manual: | PACVr.pdf |
| Vignettes: |
PACVr |
| Package source: | PACVr_0.9.4.tar.gz |
| Windows binaries: | r-devel: PACVr_0.9.4.zip, r-release: PACVr_0.9.4.zip, r-oldrel: PACVr_0.9.4.zip |
| macOS binaries: | r-release (arm64): not available, r-oldrel (arm64): PACVr_0.9.4.tgz, r-release (x86_64): not available, r-oldrel (x86_64): not available |
| Old sources: | PACVr archive |
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