Provides efficient tools for population genomics data analysis, able to process individual loci, large sets of loci, or whole genomes. PopGenome <doi:10.1093/molbev/msu136> not only implements a wide range of population genetics statistics, but also facilitates the easy implementation of new algorithms by other researchers. PopGenome is optimized for speed via the seamless integration of C code.
| Version: | 2.7.5 |
| Depends: | R (≥ 2.14.2), ff |
| Imports: | methods |
| Suggests: | parallel, bigmemory, BASIX, WhopGenome, BlockFeST |
| Published: | 2020-01-31 |
| Author: | Bastian Pfeifer [aut, cre], Ulrich Wittelsbuerger [ctb], Heng Li [ctb], Bob Handsaker [ctb] |
| Maintainer: | Bastian Pfeifer <bastianxpfeifer at gmail.com> |
| License: | GPL-3 |
| Copyright: | inst/COPYRIGHTS PopGenome copyright details |
| NeedsCompilation: | yes |
| SystemRequirements: | zlib headers and library. |
| Citation: | PopGenome citation info |
| Materials: | NEWS |
| CRAN checks: | PopGenome results |
| Reference manual: | PopGenome.pdf |
| Vignettes: |
An introduction to the PopGenome package Integration of new Methods Whole genome analyses using VCF files |
| Package source: | PopGenome_2.7.5.tar.gz |
| Windows binaries: | r-devel: PopGenome_2.7.5.zip, r-release: PopGenome_2.7.5.zip, r-oldrel: PopGenome_2.7.5.zip |
| macOS binaries: | r-release (arm64): PopGenome_2.7.5.tgz, r-oldrel (arm64): PopGenome_2.7.5.tgz, r-release (x86_64): PopGenome_2.7.5.tgz, r-oldrel (x86_64): PopGenome_2.7.5.tgz |
| Old sources: | PopGenome archive |
| Reverse suggests: | coala |
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