Rarefy: Rarefaction Methods
Includes functions for the calculation of spatially and non-spatially explicit rarefaction curves using different indices of taxonomic, functional and phylogenetic diversity. The user can also rarefy any biodiversity metric as provided by a self-written function (or an already existent one) that gives as output a vector with the values of a certain index of biodiversity calculated per plot (Ricotta, C., Acosta, A., Bacaro, G., Carboni, M., Chiarucci, A., Rocchini, D., Pavoine, S. (2019) <doi:10.1016/j.ecolind.2019.105606>; Bacaro, G., Altobelli, A., Cameletti, M., Ciccarelli, D., Martellos, S., Palmer, M. W., … Chiarucci, A. (2016) <doi:10.1016/j.ecolind.2016.04.026>; Bacaro, G., Rocchini, D., Ghisla, A., Marcantonio, M., Neteler, M., & Chiarucci, A. (2012) <doi:10.1016/j.ecocom.2012.05.007>).
| Version: |
1.1 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
ade4, adiv, ape, dplyr, geiger, methods, stats, vegan |
| Suggests: |
kableExtra, knitr, phyloregion, picante, phytools, raster, rmarkdown |
| Published: |
2021-03-11 |
| Author: |
Elisa Thouverai [aut, cre],
Sandrine Pavoine [aut],
Enrico Tordoni [aut],
Duccio Rocchini [aut],
Carlo Ricotta [aut],
Alessandro Chiarucci [aut],
Giovanni Bacaro [aut] |
| Maintainer: |
Elisa Thouverai <elisa.th95 at gmail.com> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: |
no |
| CRAN checks: |
Rarefy results |
Documentation:
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