SCORPIUS: Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data
An accurate and easy tool for performing linear trajectory inference on single cells using single-cell RNA sequencing data. In addition, SCORPIUS provides functions for discovering the most important genes with respect to the reconstructed trajectory, as well as nice visualisation tools. Cannoodt et al. (2016) <doi:10.1101/079509>.
| Version: | 1.0.8 |
| Depends: | R (≥ 3.5.0) |
| Imports: | dplyr, dynutils (≥ 1.0.3), dynwrap, grDevices, ggplot2 (≥ 2.0), lmds, MASS, Matrix, mclust, methods, pbapply, pheatmap, princurve (≥ 2.1.4), purrr, ranger, RANN, RColorBrewer, reshape2, stats, tidyr, TSP |
| Suggests: | covr, knitr, rmarkdown, R.rsp, testthat (≥ 2.1.0) |
| Published: | 2021-06-09 |
| Author: | Robrecht Cannoodt 
[aut, cre] (rcannood),
Wouter Saelens
[ctb] (zouter) |
| Maintainer: | Robrecht Cannoodt <rcannood at gmail.com> |
| BugReports: | https://github.com/rcannood/SCORPIUS/issues |
| License: | GPL-3 |
| URL: | https://github.com/rcannood/SCORPIUS |
| NeedsCompilation: | no |
| Citation: | SCORPIUS citation info |
| Materials: | README NEWS |
| CRAN checks: | SCORPIUS results |
Documentation:
| Reference manual: | SCORPIUS.pdf |
| Vignettes: |
Investigating dendritic cell maturation in dendritic cell progenitors Trajectory inference from simulated data Running SCOPIUS on a Seurat object |
Downloads:
| Package source: | SCORPIUS_1.0.8.tar.gz |
| Windows binaries: | r-devel: SCORPIUS_1.0.8.zip, r-release: SCORPIUS_1.0.8.zip, r-oldrel: SCORPIUS_1.0.8.zip |
| macOS binaries: | r-release (arm64): SCORPIUS_1.0.8.tgz, r-oldrel (arm64): SCORPIUS_1.0.8.tgz, r-release (x86_64): SCORPIUS_1.0.8.tgz, r-oldrel (x86_64): SCORPIUS_1.0.8.tgz |
| Old sources: | SCORPIUS archive |
Linking:
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