cbioportalR: Browse and Query Clinical and Genomic Data from cBioPortal

Provides R users with direct access to genomic and clinical data from the 'cBioPortal' web resource via user-friendly functions that wrap 'cBioPortal's' existing API endpoints <https://www.cbioportal.org/api/swagger-ui/index.html>. Users can browse and query genomic data on mutations, copy number alterations and fusions, as well as data on tumor mutational burden ('TMB'), microsatellite instability status ('MSI'), 'FACETS' and select clinical data points (depending on the study). See <https://www.cbioportal.org/> and Gao et al., (2013) <doi:10.1126/scisignal.2004088> for more information on the cBioPortal web resource.

Version:	1.0.0
Depends:	R (≥ 2.10)
Imports:	httr (≥ 1.4.3), tibble (≥ 3.1.7), purrr (≥ 0.3.4), magrittr (≥ 2.0.3), rlang (≥ 1.0.3), glue (≥ 1.6.2), jsonlite (≥ 1.8.0), tidyr (≥ 1.2.0), dplyr (≥ 1.0.9), stringr (≥ 1.4.0), cli (≥ 3.3.0)
Suggests:	testthat (≥ 3.1.4), knitr (≥ 1.39), rmarkdown (≥ 2.14), covr (≥ 3.5.1), spelling (≥ 2.2)
Published:	2022-08-10
Author:	Karissa Whiting [aut, cre]
Maintainer:	Karissa Whiting <karissa.whiting at gmail.com>
BugReports:	https://github.com/karissawhiting/cbioportalR/issues
License:	MIT + file LICENSE
URL:	https://github.com/karissawhiting/cbioportalR, https://www.karissawhiting.com/cbioportalR/
NeedsCompilation:	no
Language:	en-US
Materials:	README NEWS
CRAN checks:	cbioportalR results

Documentation:

Reference manual:	cbioportalR.pdf
Vignettes:	Internal Structure & Guiding Principles Overview of Data Retrieval Workflow

Downloads:

Package source:	cbioportalR_1.0.0.tar.gz
Windows binaries:	r-devel: not available, r-release: cbioportalR_1.0.0.zip, r-oldrel: not available
macOS binaries:	r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): cbioportalR_1.0.0.tgz, r-oldrel (x86_64): cbioportalR_1.0.0.tgz

Linking:

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