chromatographR 0.4.1

Extended package DESCRIPTION and added citations to relevant references.
Added \value and \section{Side effects} fields to docs for the various plot functions.
Fixed bug in mirror_plot so legend can be fully hidden by setting plot_legend to FALSE.
Fixed bug in scan_chrom so additional arguments are passed to plot_spectrum.
Added color argument to customize color of fitted peaks in plot.peak_list.
Fixed plot functions and examples so they don’t change par settings.
Other small updates to documents (mostly formatting or small clarifications).
Fixed plot.peak_table so it can return spectra if export_spectrum is TRUE.
Added error for box_plot option in plot.peak_table if metadata is not attached.
Added error for box_plot option in plot.peak_table if peak is not provided to loc.
Added error in plot_spectrum function for user-supplied retention times beyond the edges of the chromatogram.
Added error in plot_spectrum function for unspecified lambda (if what=="click).

chromatographR 0.4.0

Added support for variable penalty dynamic time warping (VPdtw) through correct_rt function.
Fixed bug in get_peaks function.
Allow preprocessing without interpolation.
Fixed bug so preprocess can work on Windows (without parallel processing).
Allow use of raw data for peak integration in get_peaks.
Added verbose option to correct_rt to print reference chromatogram.