concurve 2.7.7
Major changes
log option added to curve_gen() to exponentiate the coefficients.
- customization option for
title fully added to ggcurve()
concurve 2.7.5
Major changes
- Substantial revisions to the documents and website
- Now, far fewer dependencies to avoid potential conflicts in the future
- Included lots of resources for individuals to better learn the concepts
- Far better improvement in documentation and in continous integration
- Added several messages that accompany functions from the program to aid researchers
- Larger and improved tutorial on how to construct these functions using Stata
concurve 2.7.0
Major changes
curve_gen() now includes options to adjust CIs and P-values for multiple comparisons.curve_gen() can now accept inputs from the rms package’s ols() function.
- This can be done using the same
lm option that is typically used.
- disabled likelihood function computations for
curve_rev() for continuous variables due to instability.
Minor changes
- improvements to documentation all around.
- new article on estimating variance components using
lme4.
- new article on using
curve_table() to produce outputs from the functions.
- updates to article on troubleshooting and parallel computing.
concurve 2.6.0
Major changes
- An error in
curve_rev() was fixed where for the default measure, the computations were calculated as if measure was set to ratio.
curve_rev() can now take summary statistics such as the point estimate and it’s standard error to back calculate the function.
curve_boot() now takes an option allowing users to specify the number of cores to be used.- Graphing functions such as
ggcurve() and plot_compare() now have the options to customize the second y-axis and also change the color of the outline of the functions.
- Thus, the argument
yaxis has been replaced by yaxis1 and yaxis2.
- For
plot_compare() color has been replaced by color1 and color2
concurve 2.5.0
Major changes
curve_meta() can now handle complex data structures from metafor with clustered data.curve_gen() can now handle ANOVAs and robust linear regressions from the MASS package.concurve is now intergrated with the cowplot package for easier graphing.- removed
tibble::tibble() integration due to breakage in code.
expand_scale() has been replaced with expansion() within the inner workings of ggcurve() and plot_compare() due to the former function (expand_scale()) being deprecated.
concurve 2.4.1
Major changes
- New function
curve_lmer() for mixed-effects models
- Fixed a bug where
curve_meta() could not utilize rma.mh() or rma.peto() from metafor.
concurve 2.4.0
Major changes
curve_boot() can utilize parametric Bca bootstrap methods to compute functions.- Corrected error where order of labels in columns for
curve_boot() tables was incorrect.
- Corrected error where order of labels in columns for
curve_meta() tables was incorrect.
- Set minimum version of
R to 3.5.0.
- included
install.packages("concurve", dep = TRUE) as solution to installation problems for some individuals.
- Removed
MASS, compiler, and Rlang from DESCRIPTION IMPORTS, since these weren’t used.
- Wrote new unit tests examing the class of each of the objects created from the functions.
Minor changes
ggcurve() theme has been changed from theme_bw() to theme_minimal().- Several new examples in the “Examples in R” article.
concurve 2.3.0
Major changes
ggconcurve() is now ggcurve().ggcurve() plots confidence (consonance) distributions, densities, likelihood, and deviance functions.plot_curve() is now deprecated. Please use ggcurve() instead.curve_compare() compares two functions and calculates the area between the curve.plot_compare()allows two separate functions to be plotted and compared simultaneously.curve_table() produces publication-ready tables of relevant statistics.curve_boot() uses bootstrapping to approximate the consonance functions via the boot and bcaboot packages.curve_lik() produces likelihood functions by transforming the objects from the ProfileLikelihood package.
Minor changes
- All functions now provide progress on how long it will take to complete the task.
- Interval widths are now provided as measures of precision.
concurve 2.1.0
Major changes
ggconcurve() now plots both the P-values and CI level using both y-axes when the type = “consonance”. Previously, this was only possible via plot_concurve() (which uses base R graphics) because ggplot2 had a bug in its last few versions, which inhibited proper transformations in the y-axis.
concurve 2.0.1
Major changes
plot_concurve() now has “measure” as an item which allows for ratio measures to be logarithmically scaled on the x axis. There are two options, “default”, which is set as the default option and is for mean differences, and “ratio”, which will result in the axis being logarithmically scaled.plot_concurve() also now has a “fill” option which will allow users to choose the color of the plot.
concurve 2.0
Major changes
- The
plotpint() function which plotted consonance functions has been repackaged into ggconcurve().
- The
plotsint() function which plotted surprisal functions has been repackaged into ggconcurve().
- Functions can now also be plotted with base R via the
plot_concurve() function.
- Consonance functions can be plotted as a pyramid (right side up) or inverted (upside down) via the “position” item in
ggconcurve().
- Null values (for means & ratios) can be plotted via the
ggconcurve() function to show how much of the interval surrounds it.
- Log transformations included in all the plotting functions for ratio measures.
- Parallel programming has now been implemented into the computations via the
mclapply() function from the parallel package.
concurve 1.08
Major changes
- Can produce consonance and surprisal functions for correlations via the
corrintervals() function.
- Now able to construct consonance and surprisal functions from the point estiate, and confidence limits via the
rev_eng() function.
- Graphs produced via the
plotpint() or plotsint() function now able to take custom titles, subtitles, x-axis titles, and captions.
concurve 1.07
Major changes
- Can now produce consonance and surprisal functions for survival data produced with the
survival package.
concurve 1.06
Major changes
- Now contains documentation for producing interval functons in
Stata.
Minor changes
- Default plots now contain grids, title, subtitle, and a caption.
- Updated figures in README and the ‘Examples in R’ vignette/article.