cosmicsig: Mutational Signatures from COSMIC (Catalogue of Somatic Mutations in Cancer)

A data package with 2 main package variables: 'signature' and 'etiology'. The 'signature' variable contains the latest mutational signature profiles released on COSMIC <https://cancer.sanger.ac.uk/signatures/> for 4 mutation types: * single base substitutions in the context of preceding and following bases, * Strand bias single base substitutions: single base substitutions from transcribed regions, that take into consideration the the transcribed versus non-transcribed strand, * Doublet base substitutions, and * Small insertions and deletions. The 'etiology' variable provides the known or hypothesized causes of signatures. 'cosmicsig' stands for COSMIC signatures. Please run ?'cosmicsig' for more information.

Version:	1.0.7
Depends:	R (≥ 3.5)
Suggests:	testthat (≥ 3.0.0), ICAMS, usethis
Published:	2021-12-20
Author:	Steven Rozen [aut, cre], Nanhai Jiang [aut]
Maintainer:	Steven Rozen <steverozen at pm.me>
BugReports:	https://github.com/Rozen-Lab/cosmicsig/issues
License:	GPL-3
URL:	https://github.com/Rozen-Lab/cosmicsig
NeedsCompilation:	no
Language:	en-US
Citation:	cosmicsig citation info
Materials:	README NEWS
CRAN checks:	cosmicsig results

Documentation:

Reference manual:

cosmicsig.pdf

Downloads:

Package source:	cosmicsig_1.0.7.tar.gz
Windows binaries:	r-devel: cosmicsig_1.0.7.zip, r-release: cosmicsig_1.0.7.zip, r-oldrel: cosmicsig_1.0.7.zip
macOS binaries:	r-release (arm64): cosmicsig_1.0.7.tgz, r-oldrel (arm64): cosmicsig_1.0.7.tgz, r-release (x86_64): cosmicsig_1.0.7.tgz, r-oldrel (x86_64): cosmicsig_1.0.7.tgz

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