digitalDLSorteR 0.1.0
(2021-10-08)
- Added a
NEWS.md file to track changes to the
package.
digitalDLSorteR 0.1.1
(2021-10-18)
- Added Solaris OS as one of the options in
switch
function (BiocParallel environment in
estimateZinbwaveParams function).
- Some changes related to information about the package: messages
during execution, README.
digitalDLSorteR 0.2.0
(2022-01-10)
- Implemented different ways to generate pseudo-bulk samples: MeanCPM,
AddCPM, and AddRawCount (
simBulkProfiles function).
- Implemented different ways to scale data before training:
standarization and rescaling (
trainDigitalDLSorterModel
function).
- Vignettes updated.
digitalDLSorteR 0.3.0
(2022-05-24)
- The
splatter dependency has been removed: instead of
using splatter as a wrapper, zinbFit from the
zinbwave package is used directly via the
.zinbWaveModel function + the
ZinbParametersModel class. This change affects some
functions in terms of classes/objects. Previous pre-trained models
(digitalDLSorteRmodels package) may not work properly. They
will be generated soon.
- The
edgeR dependency has been removed: CPM-related
calculations have been implemented (.cpmCalculate
function). Now, results may be slightly different from those obtained
with edgeR.