To cite medusa, auteur, or geiger in a publication use:

medusa

Alfaro M, Santini F, Brock C, Alamillo H, Dornburg A, Rabosky D, Carnevale G, Harmon L (2009). “Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates.” Proceedings of the National Academy of Sciences of the United States of America, 106, 13410-13414.

auteur

Eastman J, Alfaro M, Joyce P, Hipp A, Harmon L (2011). “A novel comparative method for identifying shifts in the rate of character evolution on trees.” Evolution, 65, 3578-3589.

MECCA

Slater G, Harmon L, Wegmann D, Joyce P, Revell L, Alfaro M (2012). “Fitting models of continuous trait evolution to incompletely sampled comparative data using approximate Bayesian computation.” Evolution, 66, 752-762.

geiger-orig

Harmon L, Weir J, Brock C, Glor R, Challenger W (2008). “GEIGER: investigating evolutionary radiations.” Bioinformatics, 24, 129-131.

geiger

Pennell M, Eastman J, Slater G, Brown J, Uyeda J, Fitzjohn R, Alfaro M, Harmon L (2014). “geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees.” Bioinformatics, 30, 2216-2218.

Corresponding BibTeX entries:

  @Article{,
    title = {Nine exceptional radiations plus high turnover explain
      species diversity in jawed vertebrates},
    author = {ME Alfaro and F Santini and C Brock and H Alamillo and A
      Dornburg and DL Rabosky and G Carnevale and LJ Harmon},
    journal = {Proceedings of the National Academy of Sciences of the
      United States of America},
    year = {2009},
    volume = {106},
    pages = {13410-13414},
  }

  @Article{,
    title = {A novel comparative method for identifying shifts in the
      rate of character evolution on trees},
    author = {JM Eastman and ME Alfaro and P Joyce and AL Hipp and LJ
      Harmon},
    journal = {Evolution},
    year = {2011},
    volume = {65},
    pages = {3578-3589},
  }

  @Article{,
    title = {Fitting models of continuous trait evolution to
      incompletely sampled comparative data using approximate Bayesian
      computation},
    author = {GJ Slater and LJ Harmon and D Wegmann and P Joyce and LJ
      Revell and ME Alfaro},
    journal = {Evolution},
    year = {2012},
    volume = {66},
    pages = {752-762},
  }

  @Article{,
    title = {GEIGER: investigating evolutionary radiations},
    author = {LJ Harmon and JT Weir and CD Brock and RE Glor and W
      Challenger},
    journal = {Bioinformatics},
    year = {2008},
    volume = {24},
    pages = {129-131},
  }

  @Article{,
    title = {geiger v2.0: an expanded suite of methods for fitting
      macroevolutionary models to phylogenetic trees},
    author = {MW Pennell and JM Eastman and GJ Slater and JW Brown and
      JC Uyeda and RG Fitzjohn and ME Alfaro and LJ Harmon},
    journal = {Bioinformatics},
    year = {2014},
    volume = {30},
    pages = {2216-2218},
  }