genekitr: Gene Analysis Toolkit in R
An analysis toolkit focused on genes. It mainly includes five
features (search, convert, analysis, plot, and export).
The user just needs to input feature id ('entrez', 'symbol', 'ensembl' or
'uniprot') to retrieve feature information and PubMed records, to convert id
types, to easily do enrichment analysis and draw publication-level plots of GO,
KEGG and GSEA, to plot group interaction and export results as sheets in one excel
file to easily share and communicate with others.
| Version: |
1.0.3 |
| Depends: |
R (≥ 3.6) |
| Imports: |
clusterProfiler, dplyr, DOSE, europepmc, fst, geneset, ggplot2, ggraph, igraph, magrittr, openxlsx, stringr, stringi, tidyr, VennDiagram, rlang |
| Suggests: |
AnnotationDbi, BiocManager, cowplot, ComplexUpset, data.table, forcats, fgsea, futile.logger, ggplotify, ggsci, ggupset, ggrepel, ggridges, ggnewscale, GOplot, GOSemSim, labeling, msigdbr, pheatmap, tm, treemap, RColorBrewer, rappdirs, RCurl, reshape2, rio, rrvgo, scales, stats, testthat (≥ 3.0.0), tibble, wordcloud, knitr, rmarkdown |
| Published: |
2022-07-19 |
| Author: |
Yunze Liu  [aut,
cre] |
| Maintainer: |
Yunze Liu <jieandze1314 at gmail.com> |
| BugReports: |
https://github.com/GangLiLab/genekitr/issues |
| License: |
GPL-3 |
| URL: |
https://www.genekitr.fun/ |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
genekitr results |
Documentation:
Downloads:
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