gwasrapidd 0.99.13
- Update pkgdown documentation to use template bootstrap 5.
- Regenerated precompiled vignettes.
gwasrapidd 0.99.11
- Fixed issues #8, #14, #16 and #17.
- Added identifier mapping functions:
study_to_association(), study_to_variant(),
study_to_trait(), association_to_study(),
association_to_variant(),
association_to_trait(), variant_to_study(),
variant_to_association(), variant_to_trait(),
trait_to_study(), trait_to_association(), and
trait_to_variant().
gwasrapidd 0.99.10
gwasrapidd 0.99.9
- gwasrapidd depends now on tidyr (> 0.8.99).
gwasrapidd 0.99.8
genomic_contexts of object variants
includes now the column is_mapped_gene.
gwasrapidd 0.99.7
gwasrapidd 0.99.6
gwasrapidd 0.99.5
gwasrapidd 0.99.4
- Added function
open_in_gwas_catalog().
gwasrapidd 0.0.1
- Updated gwasrapidd packaging to comply with Bioconductor guidelines
(
BiocCheck::BiocCheck()).
gwasrapidd 0.0.0.9015
- Fixed typo in cheatsheet.
gwasrapidd 0.0.0.9014
get_variants() can now use the
cytogenetic_band criterion.
gwasrapidd 0.0.0.9013
- Added the dataset
cytogenetic_bands.
gwasrapidd 0.0.0.9012
- Updated README installation command to use the new
remotes package.
- Devel version badge is now hardcoded directly instead of using a
call to
badger.
gwasrapidd 0.0.0.9011
get_variants() now accepts a new parameter:
std_chromosomes_only. This allows to select whether
variants mapped to scaffolds other than the standard chromosomes are
returned. By default, now, get_variants() only returns
variants mapped to chromosomes 1 thru 22, X, Y, or MT. This behaviour is
now in line with results returned by the Web UI.- Fixed bug with
multiple_snp_haplotype and
snp_interaction. NA values in columns
multiple_snp_haplotype and snp_interaction of
associations tibble in associations S4 object were being mapped to
character type instead of logical. This is now fixed.
- Constructors for GWAS Catalog S4 objects ensure no NAs are in
primary keys.
- Increased test coverage.
gwasrapidd 0.0.0.9010
- Changed type of column
association_id in the S4 class
associations from integer() to
character(). This saves us from unnecessary coercions from
integer to character when searching by association identifiers.
- The cheatsheet is also changed to reflect this update.
gwasrapidd 0.0.0.9009
- Added function
exists_variant().
gwasrapidd 0.0.0.9008
- Improved the Getting Started vignette.
gwasrapidd 0.0.0.9007
- Added two new functions:
open_in_dbsnp() and
open_in_gtex().
gwasrapidd 0.0.0.9006
gwasrapidd 0.0.0.9005
- Improved test coverage significantly.
gwasrapidd 0.0.0.9004
- Reorganized mock fixtures. Now mock file paths are all under 100
chars. No more R CMD check whining.
gwasrapidd 0.0.0.9003
- Reference documentation is organized in the website.