ivmte: An R Package for Marginal Treatment Effect Methods

Introduction

@heckmanvytlacil2005e introduced the marginal treatment effect (MTE) to provide a choice-theoretic interpretation for the widely used instrumental variables model of @imbensangrist1994e. The MTE can be used to formally extrapolate from the compliers to estimate treatment effects for other subpopulations.

The ivmte package provides a flexible set of methods for conducting this extrapolation. The package uses the moment-based framework developed by @mogstadsantostorgovitsky2018e, which accommodates both point identification and partial identification (bounds), both parametric and nonparametric models, and allows the user to maintain additional shape constraints.

Scope of this Vignette

This vignette is intended as a guide to using ivmte for users already familiar with MTE methods. The key defintions and concepts from that literature are used without further explanation. We have written a paper [@sheatorgovitsky2021wp] that discusses both the MTE methodology and the usage of ivmte, which should be helpful for users unfamiliar with MTE methods. The survey article by @mogstadtorgovitsky2018aroe provides additional theoretical background on MTE methods, including the moment-based implementation used in this module.

Installation and Requirements

ivmte can be installed from CRAN via

install.packages("ivmte")

If you have the devtools package, you can install the latest version of the module directly from our GitHub repository via

devtools::install_github("jkcshea/ivmte")

Two additional packages are also required for ivmte:

1. splines2 for specifying models with polynomial splines. This package is available on CRAN.
2. A package for solving linear programs. There are three options here:
   1. Gurobi and the Gurobi R package gurobi, which can be obtained from Gurobi Optimization. This option requires a Gurobi software license, which Gurobi Optimization offers at no cost to academic researchers.
   2. CPLEX and the package cplexAPI, which is available on CRAN. CPLEX can be obtained from IBM. This option requires a CPLEX software license, which IBM offers at no cost to academic researchers.
   3. MOSEK and the package Rmosek, which can be obtained from MOSEK ApS. This option requires a MOSEK software license, which MOSEK ApS offers at no cost to academic researchers.
   4. The lpSolveAPI package, which is free and open-source, and available from CRAN. Note that lpSolveAPI is a wrapper for lp_solve, which is no longer actively developed.

ivmte tries to automatically choose a solver from those available, with preference being given to Gurobi, CPLEX, and MOSEK. We have provided the option to use lpSolveAPI because it appears to be the only interface for solving linear programs that can be installed solely through install.packages. However, we strongly recommend using Gurobi, CPLEX, or MOSEK, since these are actively developed, much more stable, and typically an order of magnitude faster than lpSolveAPI. A very clear installation guide for Gurobi can be found here

Usage Demonstration

Data and Background

We will use a subsample of 209133 women from the data used in @angristevans1998taer. The data is included with ivmte and has the following structure.

library(ivmte)
knitr::kable(head(AE, n = 10))

We will use these variables as follows:

• worked is a binary outcome variable that indicates whether the woman was working.
• hours is a multivalued outcome variable that measures the number of hours the woman worked per week.
• morekids is a binary treatment variable that indicates whether a woman had more than two children or exactly two children.
  • Note that @angristevans1998taer removed women with fewer than two children when constructing their sample.
  • Also note that the treatment variable must be binary.
• samesex is an indicator for whether the woman’s first two children had the same sex (male-male or female-female). This is used as an instrument for morekids.
• yob is the woman’s year of birth (i.e. her age), which will be used as a conditioning variable.

A goal of @angristevans1998taer was to estimate the causal effect of morekids on either worked or hours. A linear regression of worked on morekids yields:

lm(data = AE, worked ~ morekids)
#> 
#> Call:
#> lm(formula = worked ~ morekids, data = AE)
#> 
#> Coefficients:
#> (Intercept)     morekids  
#>      0.5822      -0.1423

The regression shows that women with three or more children are about 14–15% less likely to be working than women with exactly two children. Is this because children have a negative impact on a woman’s labor supply? Or is it because women with a weaker attachment to the labor market choose to have more children?

@angristevans1998taer address this question by using samesex as an instrument for morekids. We expect that samesex is randomly assigned, so that among women with two or more children, those with weak labor market attachment are just as likely as those with strong labor market attachment to have to have two boys or two girls for their first two children. A regression shows that women whose first two children had the same sex are also more likely to go on to have a third child:

lm(data = AE, morekids ~ samesex)
#> 
#> Call:
#> lm(formula = morekids ~ samesex, data = AE)
#> 
#> Coefficients:
#> (Intercept)      samesex  
#>     0.30214      0.05887

Thus, samesex constitutes a potential instrumental variable for morekids. We can run a simple instrumental variable regression using the ivreg command from the AER package.

library("AER")
ivreg(data = AE, worked ~ morekids | samesex )
#> 
#> Call:
#> ivreg(formula = worked ~ morekids | samesex, data = AE)
#> 
#> Coefficients:
#> (Intercept)     morekids  
#>     0.56315     -0.08484

The coefficient on morekids is smaller in magnitude than it was in the linear regression of worked on morekids. This suggests that the linear regression overstates the negative impact that children have on a woman’s labor supply. The likely explanation is that women who have more children were less likely to work anyway.

An important caveat to this reasoning, first discussed by @imbensangrist1994e, is that it applies only to the group of compliers who would have had a third child if and only if their first two children were same sex. (This interpretation requires the so-called monotonicity condition.) The first stage regression of morekids on samesex shows that this group comprises less than 6% of the entire population. Thus, the complier subpopulation is a small and potentially unrepresentative group of individuals.

Is the relationship between fertility and labor supply for the compliers the same as for other groups? The answer is important if we want to use an instrumental variable estimator to inform policy questions. The purpose of ivmte is to provide a formal framework for answering this type of extrapolation question.

For demonstrating some of the features of ivmte, it will also be useful to use a simulated dataset. The following code, which is contained in ./extdata/ivmteSimData.R, generates some simulated data from a simple DGP. The simulated data is also included with the package as ./data/ivmteSimData.rda.

set.seed(1)
n <- 5000
u <- runif(n)
z <- rbinom(n, 3, .5)
x <- as.numeric(cut(rnorm(n), 10)) # normal discretized into 10 bins
d <- as.numeric(u < z*.25 + .01*x)

v0 <- rnorm(n) + .2*u
m0 <- 0
y0 <- as.numeric(m0 + v0 + .1*x > 0)

v1 <- rnorm(n) - .2*u
m1 <- .5
y1 <- as.numeric(m1 + v1 - .3*x > 0)

y <- d*y1 + (1-d)*y0

ivmteSimData <- data.frame(y,d,z,x)
knitr::kable(head(ivmteSimData, n = 10))

Syntax and Output Overview

The main command of the ivmte package is also called ivmte. It has the following basic syntax:

library("ivmte")
results <- ivmte(data = AE,
                 target = "att",
                 m0 = ~ u + yob,
                 m1 = ~ u + yob,
                 ivlike = worked ~ morekids + samesex + morekids*samesex,
                 propensity = morekids ~ samesex + yob,
                 noisy = TRUE)

Here’s what these required parameters refer to:

• data = AE is the usual reference to the data to be used.
• target = "att" specifies the target parameter to be the average treatment on the treated (ATT).
• m0 and m1 are formulas specifying the MTR functions for the untreated and treated arms, respectively. The symbol u in the formula refers to the unobservable latent variable in the selection equation.
• ivlike indicates the regressions to be run to create moments to which the model is fit.
• propensity specifies a model for the propensity score.

This is what happens when the code above is run:

results <- ivmte(data = AE,
                 target = "att",
                 m0 = ~ u + yob,
                 m1 = ~ u + yob,
                 ivlike = worked ~ morekids + samesex + morekids*samesex,
                 propensity = morekids ~ samesex + yob,
                 noisy = TRUE)
#> 
#> Solver: Gurobi ('gurobi')
#> 
#> Obtaining propensity scores...
#> 
#> Generating target moments...
#>     Integrating terms for control group...
#>     Integrating terms for treated group...
#> 
#> Generating IV-like moments...
#>     Moment 1...
#>     Moment 2...
#>     Moment 3...
#>     Moment 4...
#>     Independent moments: 4 
#> 
#> Performing audit procedure...
#>     Generating initial constraint grid...
#> 
#>     Audit count: 1
#>     Minimum criterion: 0
#>     Obtaining bounds...
#>     Violations: 0
#>     Audit finished.
#> 
#> Bounds on the target parameter: [-0.1028836, -0.07818869]

When noisy = TRUE, the ivmte function indicates its progress in performing a sequence of intermediate operations. It then runs through an audit procedure to enforce shape constraints. The audit procedure is described in more detail ahead. After the audit procedure terminates, ivmte returns bounds on the target parameter, which in this case is the average treatment on the treated (target = "att"). These bounds are the primary output of interest.

The detailed output can be suppressed by passing noisy = FALSE as an additional parameter. By default, detailed output is suppressed. Should the user wish to review the output, it is returned under the entry $messages, regardless of the value of the noisy parameter.

results <- ivmte(data = AE,
                 target = "att",
                 m0 = ~ u + yob,
                 m1 = ~ u + yob,
                 ivlike = worked ~ morekids + samesex + morekids*samesex,
                 propensity = morekids ~ samesex + yob,
                 noisy = FALSE)
results
#> 
#> Bounds on the target parameter: [-0.1028836, -0.07818869]
#> Audit terminated successfully after 1 round
cat(results$messages, sep = "\n")
#> 
#> Solver: Gurobi ('gurobi')
#> 
#> Obtaining propensity scores...
#> 
#> Generating target moments...
#>     Integrating terms for control group...
#>     Integrating terms for treated group...
#> 
#> Generating IV-like moments...
#>     Moment 1...
#>     Moment 2...
#>     Moment 3...
#>     Moment 4...
#>     Independent moments: 4 
#> 
#> Performing audit procedure...
#>     Generating initial constraint grid...
#> 
#>     Audit count: 1
#>     Minimum criterion: 0
#>     Obtaining bounds...
#>     Violations: 0
#>     Audit finished.
#> 
#> Bounds on the target parameter: [-0.1028836, -0.07818869]

Specifying the MTR Functions

Basics

The required m0 and m1 arguments use the standard R formula syntax familiar from functions like lm or glm. However, the formulas involve an unobservable variable, u, which corresponds to the latent propensity to take treatment in the selection equation. This variable can be included in formulas in the same way as other observable variables in the data. For example,

args <- list(data = AE,
             ivlike =  worked ~ morekids + samesex + morekids*samesex,
             target = "att",
             m0 = ~ u + I(u^2) + yob + u*yob,
             m1 = ~ u + I(u^2) + I(u^3) + yob + u*yob,
             propensity = morekids ~ samesex + yob)
r <- do.call(ivmte, args)
r
#> 
#> Bounds on the target parameter: [-0.2950822, 0.1254494]
#> Audit terminated successfully after 3 rounds

A restriction that we make for computational purposes is that u can only appear in polynomial terms (perhaps interacted with other variables). Thus, the following raises an error

args[["m0"]] <- ~ log(u) + yob
r <- do.call(ivmte, args)
#> Error: The following terms are not declared properly.
#>   m0: log(u) 
#> The unobserved variable 'u' must be declared as a monomial, e.g. u, I(u^3). The monomial can be interacted with other variables, e.g. x:u, x:I(u^3). Expressions where the unobservable term is not a monomial are either not permissible or will not be parsed correctly, e.g. exp(u), I((x * u)^2). Try to rewrite the expression so that 'u' is only included in monomials.

Names other than u can be used for the selection equation unobservable, but one must remember to pass the option uname to indicate the new name.

args[["m0"]] <- ~ v + I(v^2) + yob + v*yob
args[["m1"]] <- ~ v + I(v^2) + I(v^3) + yob + v*yob
args[["uname"]] <- "v"
r <- do.call(ivmte, args)
r
#> 
#> Bounds on the target parameter: [-0.2950822, 0.1254494]
#> Audit terminated successfully after 3 rounds

There are some limitations regarding the use of factor variables. For example, the following formula for m1 will trigger an error.

args[["uname"]] <- ~ "u"
args[["m0"]] <- ~ u + yob
args[["m1"]] <- ~ u + factor(yob)55 + factor(yob)60

However, one can work around this in a natural way.

args[["m1"]] <- ~ u + (yob == 55) + (yob == 60)
r <- do.call(ivmte, args)
r
#> 
#> Bounds on the target parameter: [-0.1028836, -0.07818869]
#> Audit terminated successfully after 1 round

Polynomial Splines

In addition to global polynomials in u, ivmte also allows for polynomial splines in u using the keyword uSplines. For example,

args <- list(data = AE,
             ivlike =  worked ~ morekids + samesex + morekids*samesex,
             target = "att",
             m0 = ~ u + uSplines(degree = 1, knots = c(.2, .4, .6, .8)) + yob,
             m1 = ~ uSplines(degree = 2, knots = c(.1, .3, .5, .7))*yob,
             propensity = morekids ~ samesex + yob)
r <- do.call(ivmte, args)
r
#> 
#> Bounds on the target parameter: [-0.4545814, 0.3117817]
#> Audit terminated successfully after 2 rounds

The degree refers to the polynomial degree, so that degree = 1 is a linear spline, and degree = 2 is a quadratic spline. Constant splines, which have an important role in some of the theory developed by @mogstadsantostorgovitsky2018e, can be implemented with degree = 0. The vector knots indicates the piecewise regions for the spline. Note that 0 and 1 are always automatically included as knots, so that only the interior knots need to be specified.

Shape Restrictions

One can also require the MTR functions to satisfy the following nonparametric shape restrictions.

• Boundedness of the MTR functions, via the parameters m0.lb, m0.ub, m1.lb, and m1.ub, which all take scalar values. In order to produce non-trivial bounds in cases of partial identification, m0.lb and m1.lb are by default set to the smallest value of the response variable (which is inferred from ivlike) that is observed in the data, while m0.ub and m1.ub are set to the largest value.
• Boundedness of the MTE function, that is, m1 - m0, by setting mte.lb and mte.ub. By default, these are set to the values logically implied by the values for m0.lb, m0.ub, m1.lb, and m1.ub.
• Monotonicity of the MTR functions in u for each value of the other observed variables, via the parameters m0.dec, m0.inc, m1.dec, m1.inc, which all take boolean values.
• Monotonicity of the MTE function in u, via the parameters mte.dec and mte.inc.

Here is an example with monotonicity restrictions:

args <- list(data = AE,
             ivlike =  worked ~ morekids + samesex + morekids*samesex,
             target = "att",
             m0 = ~ u + uSplines(degree = 1, knots = c(.2, .4, .6, .8)) + yob,
             m1 = ~ uSplines(degree = 2, knots = c(.1, .3, .5, .7))*yob,
             m1.inc = TRUE,
             m0.inc = TRUE,
             mte.dec = TRUE,
             propensity = morekids ~ samesex + yob)
r <- do.call(ivmte, args)
r
#> 
#> Bounds on the target parameter: [-0.09769381, 0.09247149]
#> Audit terminated successfully after 1 round

The Audit Procedure

The shape restrictions in the previous section are enforced by adding constraints to a linear program. It is difficult in general to ensure that a function satisfies restrictions such as boundedness or monotonicity, even if that function is known to be a polynomial. This difficulty is addressed in ivmte through an auditing procedure.

The auditing procedure is based on two grids: A relatively small constraint grid, and a relatively large audit grid. The MTR functions (and implied MTE function) are made to satisfy the specified shape restrictions on the constraint grid by adding constraints to the linear programs. While this ensures that the MTR functions satisfy the shape restrictions on the constraint grid, it does not ensure that they satisfy the restrictions “everywhere.” Thus, after solving the programs, we evaluate the solution MTR functions on the large audit grid, which is relatively inexpensive computationally. If there are points in the audit grid at which the solution MTRs violate the desired restrictions, then we add some of these points to the constraint grid and repeat the procedure. The procedure ends (the audit is passed), when the solution MTRs satisfy the constraints over the entire audit grid.

There are certain parameters that can be used to tune the audit procedure: The number of initial points in the constraint grid (initgrid.nu and initgrid.nx), the number of points in the audit grid (audit.nu and audit.nx), the maximum number of points that are added from the audit grid to the constraint grid (audit.add) for each constraint, and the maximum number of times the audit procedure is repeated before giving up (audit.max). We have tried to choose defaults for these parameters that should be suitable for most applications. However, if ivmte takes a very long time to run, one might want to try adjusting these parameters. Also, if audit.max is hit, which should be unlikely given the default settings, one should either adjust the settings or examine the audit.grid$violations field of the returned results to see the extent to which the shape restrictions are not satisfied.

Specifying the Target Parameter

The target parameter is the object the researcher wants to know. ivmte has built-in support for conventional target parameters and a class of generalized LATEs. It also has a system that allows users to construct their own target parameters by defining the associated weights.

Conventional Target Parameters

The target parameter can be set to the average treatment effect (ATE), average treatment on the treated (ATT), or the average treatment on the untreated by setting target to ate, att, or atu, respectively. For example:

args <- list(data = AE,
             ivlike =  worked ~ morekids + samesex + morekids*samesex,
             target = "att",
             m0 = ~ u + I(u^2) + yob + u*yob,
             m1 = ~ u + I(u^2) + I(u^3) + yob + u*yob,
             propensity = morekids ~ samesex + yob)
r <- do.call(ivmte, args)
r
#> 
#> Bounds on the target parameter: [-0.2950822, 0.1254494]
#> Audit terminated successfully after 3 rounds
args[["target"]] <- "ate"
r <- do.call(ivmte, args)
r
#> 
#> Bounds on the target parameter: [-0.375778, 0.1957841]
#> Audit terminated successfully after 1 round

LATEs and Generalized LATEs

LATEs can be set as target parameters by passing target = late and including named lists called late.from and late.to. The named lists should contain variable name and value pairs, where the variable names must also appear in the propensity score formula. Typically, one would choose instruments for these variables, although ivmte will let you include control variables as well. We demonstrate this using the simulated data.

args <- list(data = ivmteSimData,
             ivlike =  y ~ d + z + d*z,
             target = "late",
             late.from = c(z = 1),
             late.to = c(z = 3),
             m0 = ~ u + I(u^2) + I(u^3) + x,
             m1 = ~ u + I(u^2) + I(u^3) + x,
             propensity = d ~ z + x)
r <- do.call(ivmte, args)
r
#> 
#> Bounds on the target parameter: [-0.6931532, -0.4397993]
#> Audit terminated successfully after 2 rounds

We can condition on covariates in the definition of the LATE by adding the named list late.X as follows.

args[["late.X"]] = c(x = 2)
r <- do.call(ivmte, args)
r
#> 
#> Bounds on the target parameter: [-0.8419396, -0.2913049]
#> Audit terminated successfully after 2 rounds
args[["late.X"]] = c(x = 8)
r <- do.call(ivmte, args)
r
#> 
#> Bounds on the target parameter: [-0.7721625, -0.3209851]
#> Audit terminated successfully after 2 rounds

ivmte also provides support for generalized LATEs, i.e. LATEs where the intervals of u that are being considered may or may not correspond to points in the support of the propensity score. These objects are useful for a number of extrapolation purposes, see e.g. @mogstadsantostorgovitsky2018e. They are set with target = "genlate" and the additional scalars genlate.lb and genlate.ub. For example,

args <- list(data = ivmteSimData,
             ivlike =  y ~ d + z + d*z,
             target = "genlate",
             genlate.lb = .2,
             genlate.ub = .4,
             m0 = ~ u + I(u^2) + I(u^3) + x,
             m1 = ~ u + I(u^2) + I(u^3) + x,
             propensity = d ~ z + x)
r <- do.call(ivmte, args)
args[["genlate.ub"]] <- .41
r <- do.call(ivmte, args)
args[["genlate.ub"]] <- .42
r <- do.call(ivmte, args)
r
#> 
#> Bounds on the target parameter: [-0.7504255, -0.3182317]
#> Audit terminated successfully after 2 rounds

Generalized LATEs can also be made conditional-on-covariates by passing late.X:

args[["late.X"]] <- c(x = 2)
r <- do.call(ivmte, args)
r
#> 
#> Bounds on the target parameter: [-0.867551, -0.2750135]
#> Audit terminated successfully after 2 rounds

Custom Target Parameters

Since there are potentially a large and diverse array of target parameters that a researcher might be interested in across various applications, the ivmte package also allows the specification of custom target parameters. This is done by specifying the two weighting functions for the target parameters.

To facilitate computation, these functions must be expressible as constant splines in u. For the untreated weights, the knots of the spline are specified with target.knots0 and the weights to place in between each knot is given by target.weight0. Since the weighting functions might depend on both the instrument and other covariates, both target.knots0 and target.weight0 should be lists consisting of functions or scalars. (A scalar is interpreted as a constant function.) If the lists include any functions, then the arguments of the functions must be the names of the variables that the knots or weights depend on. These variables do not have to be a part of the model, but must be included in the data provided to ivmte. Specifying the treated weights works the same way but with target.knots1 and target.weight1. If the target option is passed along with the custom weights, an error is returned.

Here is an example of using custom weights to replicate the conditional LATE from above.

pmodel <- r$propensity$model # returned from the previous run of ivmte
xeval = 2 # x = xeval is the group that is conditioned on
px <- mean(ivmteSimData$x == xeval) # probability that x = xeval
z.from = 1
z.to = 3
weight1  <- function(x) {
    if (x != xeval) {
        return(0)
    } else {
        xz.from <- data.frame(x = xeval, z = z.from)
        xz.to <- data.frame(x = xeval, z = z.to)
        p.from <- predict(pmodel, newdata = xz.from, type = "response")
        p.to <- predict(pmodel, newdata = xz.to, type = "response")
        return(1 / ((p.to - p.from) * px))
    }
}
weight0 <- function(x) {
    return(-weight1(x))
}
## Define knots (same for treated and control)
knot1 <- function(x) {
    xz.from <- data.frame(x = x, z = z.from)
    p.from <- predict(pmodel, newdata = xz.from, type = "response")
    return(p.from)
}
knot2 <- function(x) {
    xz.to <- data.frame(x = x, z = z.to)
    p.to <- predict.glm(pmodel, newdata = xz.to, type = "response")
    return(p.to)
}

args <- list(data = ivmteSimData,
             ivlike =  y ~ d + z + d*z,
             target.knots0 = c(knot1, knot2),
             target.knots1 = c(knot1, knot2),
             target.weight0 = c(0, weight0, 0),
             target.weight1 = c(0, weight1, 0),
             m0 = ~ u + I(u^2) + I(u^3) + x,
             m1 = ~ u + I(u^2) + I(u^3) + x,
             propensity = d ~ z + x)
r <- do.call(ivmte, args)
r
#> 
#> Bounds on the target parameter: [-0.8419396, -0.2913049]
#> Audit terminated successfully after 2 rounds

The knot specification here is the same for both the treated and untreated weights. It specifies two knots that depend on whether x == 2, so that there are four knots total when accounting for 0 and 1, which are always included automatically. These four knots divide the interval between 0 and 1 into three regions. The first region is from 0 to the value of the propensity score when evaluated at x and z.from. The second region is between this point and the propensity score evaluated at x and z.to. The third and final region is from this point up to 1.

Since the knot specification creates three regions, three weight functions must be passed. Here, the weights in the first and third regions are set to 0 regardless of the value of x by just passing a scalar 0. The weights in the second region are only non-zero when x == 2, in which case they are equal to the inverse of the distance between the second and third knot points. Thus, the weighting scheme applies equal weight to compliers with x == 2, and zero weight to all others. As expected, the resulting bounds match those that we computed above using target == late.

Specifying the IV–Like Estimands

The IV–like estimands refer to the moments in the data that are used to fit the model. In ivmte these are restricted to be only moments that can be expressed as the coefficient in either a linear regression (LR) or two stage least squares (TSLS) regression of the outcome variable on the other variables in the dataset.

There are three aspects that can be changed, which we discuss in order subsequently. First, one can specify one or multiple LR and TSLS formulas from which moments are used. By default, all moments from each formula are used. Second, one can specify that only certain moments from a formula are used. Third, one can specify a subset of the data on which the formula is run, which provides an easy way to nonparametrically condition on observables.

List of Linear Model Formulas

The required ivlike option expects a list of R formulas. All of our examples up to now have had a single LR. However, one can include multiple LRs, as well as TSLS regressions using the | syntax familiar from the AER package. Each formula must have the same variable on the left-hand side, which is how the outcome variable gets inferred. For example,

args <- list(data = ivmteSimData,
             ivlike =  c(y ~ (z == 1) + (z == 2) + (z == 3) + x,
                         y ~ d + x,
                         y ~ d | z),
             target = "ate",
             m0 = ~ uSplines(degree = 1, knots = c(.25, .5, .75)) + x,
             m1 = ~ uSplines(degree = 1, knots = c(.25, .5, .75)) + x,
             propensity = d ~ z + x)
r <- do.call(ivmte, args)
#> Warning: The following IV-like specifications do not include the treatment
#> variable: 1. This may result in fewer independent moment conditions than
#> expected.
r
#> 
#> Bounds on the target parameter: [-0.6427017, -0.3727193]
#> Audit terminated successfully after 1 round

There are 10 moments being fit in this specification. Five of these moments correspond to the constant term, the coefficients on the three dummies (z == 1), (z == 2) and (z == 3), and the coefficient on x from the first linear regression. There are three more coefficients from the second regression of y on d, x, and a constant. Finally, there are two moments from the TSLS (simple IV in this case) regression of y on d and a constant, using z and a constant as instruments.

Using Only Subcomponents

The default behavior of ivmte is to use all of the moments from each formula included in ivlike. There are reasons one might not want to do this, such as if certain moments are estimated poorly (i.e. with substantial statistical error). For more information, see the discussions in @mogstadsantostorgovitsky2018e and @mogstadtorgovitsky2018aroe.

One can tell ivmte to only include certain moments and not others by passing the components option. This option expects a list of the same length as the list passed to ivlike. Each component of the list is itself a list that contains the variable names for the coefficients to be included from that formula. The list should be declared using the l function, which is a generalization of the list function. The l function allows the user to list variables and expressions without having to enclose them by quotation marks. For example, the following includes the coefficients on the intercept and x from the first formula, the coefficient on d from the second formula, and all coefficients in the third formula.

args[["components"]] <- l(c(intercept, x), c(d), )
r <- do.call(ivmte, args)
r
#> 
#> Bounds on the target parameter: [-0.6865291, -0.2573525]
#> Audit terminated successfully after 1 round

Note that intercept is a reserved word that is used to specify the coefficient on the constant term. If the function list is used to pass the components option, an error will follow.

args[["components"]] <- list(c(intercept, x), c(d), )
#> Error in eval(expr, envir, enclos): object 'intercept' not found
args[["components"]] <- list(c("intercept", "x"), c("d"), "")
r <- do.call(ivmte, args)
#> Error in terms.formula(fi, ...): invalid model formula in ExtractVars

Subsetting

The formulas can be run conditional on certain subgroups by adding the subset option. This option expects a list of logical statements with the same length as ivlike declared using the l function. One can use the entire data by leaving the statement blank, or inserting a tautology such as 1 == 1. For example, the following would run the first regression only on observations with x less than or equal to 9, the second regression on the entire sample, and the third (TSLS) formula only on those observations that have z equal to 1 or 3.

args <- list(data = ivmteSimData,
             ivlike =  c(y ~ z + x,
                         y ~ d + x,
                         y ~ d | z),
             subset = l(x <= 9, 1 == 1, z %in% c(1,3)),
             target = "ate",
             m0 = ~ uSplines(degree = 3, knots = c(.25, .5, .75)) + x,
             m1 = ~ uSplines(degree = 3, knots = c(.25, .5, .75)) + x,
             propensity = d ~ z + x)
r <- do.call(ivmte, args)
#> Warning: The following IV-like specifications do not include the treatment
#> variable: 1. This may result in fewer independent moment conditions than
#> expected.
r
#> 
#> Bounds on the target parameter: [-0.6697228, -0.3331582]
#> Audit terminated successfully after 2 rounds

Specifying the Propensity Score

The procedure implemented by ivmte requires first estimating the propensity score, that is, the probability that the binary treatment variable is 1, conditional on the instrument and other covariates. This must be specified with the propensity option, which expects a formula. The treatment variable is inferred to be the variable on the left-hand side of the propensity. The default is to estimate the formula as a logit model via the glm command, but this can be changed to "linear" or "probit" with the link option.

results <- ivmte(data = AE,
                 target = "att",
                 m0 = ~ u + yob,
                 m1 = ~ u + yob,
                 ivlike = worked ~ morekids + samesex + morekids*samesex,
                 propensity = morekids ~ samesex + yob,
                 link = "probit")
results
#> 
#> Bounds on the target parameter: [-0.100781, -0.0825274]
#> Audit terminated successfully after 1 round

Point Identified Models

By default, ivmte will determine if the model is point identified. This typically occurs when ivlike, components and subset are such that they have more (non-redundant) components than there are free parameters in m0 and m1. If the model is point identified, then the bounds will typically shrink to a point. The ivmte function will then estimate the target parameter using quadratic loss and the optimal two-step GMM weighting matrix for moments. If the model is known to be point identified beforehand, one can include the option point = TRUE to ensure the target parameter is estimated this way. One can additionally pass point.eyeweight = TRUE to estimate the target parameter using identity weighting.

args <- list(data = ivmteSimData,
             ivlike =  y ~ d + factor(z),
             target = "ate",
             m0 = ~ u,
             m1 = ~ u,
             propensity = d ~ factor(z),
             point = TRUE)
r <- do.call(ivmte, args)
r
#> 
#> Point estimate of the target parameter: -0.5389508

If ivmte determines that the model is not point identified or the user passes point = FALSE, then the bounds on the target parameter will be estimated. However, the user may still pass point = FALSE even though there are more (non-redundant) moments than free parameters in m0 and m1. The bounds will collapse to a point, but may differ from the case where point = TRUE. The reason is that ivmte uses absolute deviation loss instead of quadratic loss when point = FALSE. To demonstrate this, the example below sets the tuning parameter criterion.tol = 0 so that the bounds indeed collapse to a point (see @mogstadsantostorgovitsky2018e for more detail).

args$point <- FALSE
args$criterion.tol <- 0
r <- do.call(ivmte, args)
r
#> 
#> Bounds on the target parameter: [-0.5349027, -0.5349027]
#> Audit terminated successfully after 1 round

One should use point = TRUE if the model is point identified, since it computes confidence intervals and specification tests (discussed ahead) in a well-understood way.

Confidence Intervals

The ivmte command does provide functionality for constructing confidence regions, although this is turned off by default, since it can be computationally expensive. To turn it on, set bootstraps to be a positive integer. The confidence intervals are stored under $bounds.ci.

r <- ivmte(data = AE,
           target = "att",
           m0 = ~ u + yob,
           m1 = ~ u + yob,
           ivlike = worked ~ morekids + samesex + morekids*samesex,
           propensity = morekids ~ samesex + yob,
           bootstraps = 50)
summary(r)
#> 
#> Bounds on the target parameter: [-0.1028836, -0.07818869]
#> Audit terminated successfully after 1 round 
#> MTR coefficients: 6 
#> Independent/total moments: 4/4 
#> Minimum criterion: 0 
#> Solver: Gurobi ('gurobi')
#> 
#> Bootstrapped confidence intervals (backward):
#>     90%: [-0.1767266, 0.01163401]
#>     95%: [-0.1877661, 0.0125208]
#>     99%: [-0.1879194, 0.05562988]
#> p-value: 0.16
#> Number of bootstraps: 50

Other options relevent to confidence region construction are bootstraps.m, which indicates the number of observations to draw from the sample on each bootstrap replication, and bootstraps.replace to indicate whether these observations should be drawn with or without replacement. The default is to set bootstraps.m to the sample size of the observed data with bootstraps.replace = TRUE. This corresponds to the usual nonparametric bootstrap. Choosing bootstraps.m to be smaller than the sample size and setting bootstraps.replace to be TRUE or FALSE corresponds to the “m out of n” bootstrap or subsampling, respectively. Regardless of these settings, two types of confidence regions are constructed following the terminology of @andrewshan2009ej; see @sheatorgovitsky2021wp for more detail, references, and important theoretical caveats to the procedures. While the summary output displays only the backward confidence region, both forward and backward confidence regions are stored under $bounds.ci.

r$bounds.ci
#> $backward
#>      lb.backward ub.backward
#> 0.9   -0.1767266  0.01163401
#> 0.95  -0.1877661  0.01252080
#> 0.99  -0.1879194  0.05562988
#> 
#> $forward
#>      lb.forward   ub.forward
#> 0.9  -0.2013875 -0.010580678
#> 0.95 -0.2021541 -0.007122401
#> 0.99 -0.2473285 -0.002190831

The bootstrapped bounds are returned and stored in r$bounds.bootstraps, and can be used to plot the distribution of bound estimates.

head(r$bounds.bootstrap)
#>          lower       upper
#> 1 -0.176726565 -0.13140944
#> 2 -0.079414585 -0.04838939
#> 3 -0.004379649  0.01163401
#> 4 -0.126917750 -0.09350509
#> 5 -0.110911453 -0.09289715
#> 6 -0.101183496 -0.08202556

The dashed lines in the figure below indicate the bounds obtained from the original sample.

Confidence regions can also be constructed when point == TRUE in a similar way. The bootstrapped point estimates are returned and stored in r$point.estimate.bootstraps.

args <- list(data = AE,
             target = "att",
             m0 = ~ u,
             m1 = ~ u,
             ivlike = worked ~ morekids + samesex + morekids*samesex,
             propensity = morekids ~ samesex,
             point = TRUE,
             bootstraps = 50)
r <- do.call(ivmte, args)
summary(r)
#> 
#> Point estimate of the target parameter: -0.09160436
#> MTR coefficients: 4 
#> Independent/total moments: 4/4 
#> 
#> Bootstrapped confidence intervals (nonparametric):
#>     90%: [-0.1521216, -0.02213206]
#>     95%: [-0.1595378, -0.01554401]
#>     99%: [-0.2023271, -0.002062735]
#> p-value: 0.02
#> Number of bootstraps: 50

The p-value reported in both cases is for the null hypothesis that the target parameter is equal to 0, which we infer here by finding the largest confidence region that does not contain 0. By default, ivmte returns 99%, 95%, and 90% confidence intervals. This can be changed with the levels option.

Specification Tests

The moment-based framework implemented by ivmte is amenable to specification tests. These tests are based on whether the minimum value of the criterion function is statistically different from 0. In the point identified case, this is the well known GMM overidentification test [@hansen1982e]. Here, we implement it via bootstrapping as discussed by @hallhorowitz1996e, because the moments depend on the estimated propensity score which is estimated in a first stage. In the partially identified case, we implement the misspecification test discussed by @bugnicanayshi2015joe. The specification tests are automatically conducted when bootstraps is positive and the minimum criterion value in the sample problem is larger than 0. However, it can be turned off by setting specification.test = FALSE.

args <- list(data = ivmteSimData,
             ivlike =  y ~ d + factor(z),
             target = "ate",
             m0 = ~ u,
             m1 = ~ u,
             m0.dec = TRUE,
             m1.dec = TRUE,
             propensity = d ~ factor(z),
             bootstraps = 50)
r <- do.call(ivmte, args)
#> Warning: MTR is point identified via GMM. Shape constraints are ignored.
summary(r)
#> 
#> Point estimate of the target parameter: -0.5389508
#> MTR coefficients: 4 
#> Independent/total moments: 5/5 
#> 
#> Bootstrapped confidence intervals (nonparametric):
#>     90%: [-0.6085175, -0.4937168]
#>     95%: [-0.6122408, -0.4929158]
#>     99%: [-0.6282604, -0.4765259]
#> p-value: 0
#> Bootstrapped J-test p-value: 0.32
#> Number of bootstraps: 50

args[["ivlike"]] <- y ~ d + factor(z) + d*factor(z) # many more moments
args[["point"]] <- TRUE
r <- do.call(ivmte, args)
#> Warning: If argument 'point' is set to TRUE, then shape restrictions on m0 and
#> m1 are ignored, and the audit procedure is not implemented.
summary(r)
#> 
#> Point estimate of the target parameter: -0.5559325
#> MTR coefficients: 4 
#> Independent/total moments: 8/8 
#> 
#> Bootstrapped confidence intervals (nonparametric):
#>     90%: [-0.6009581, -0.5048528]
#>     95%: [-0.605144, -0.5039834]
#>     99%: [-0.6100535, -0.501858]
#> p-value: 0
#> Bootstrapped J-test p-value: 0.52
#> Number of bootstraps: 50

Plotting MTRs and MTEs

After the estimation procedure, the MTR and MTE functions can be plotted for for further analysis. Below is a demonstration of how to generate such plots when the MTR functions contain splines.

args <- list(data = AE,
             ivlike =  worked ~ morekids + samesex + morekids*samesex,
             target = "att",
             m0 = ~ 0 + uSplines(degree = 2, knots = c(1/3, 2/3)),
             m1 = ~ 0 + uSplines(degree = 2, knots = c(1/3, 2/3)),
             m1.inc = TRUE,
             m0.inc = TRUE,
             mte.dec = TRUE,
             propensity = morekids ~ samesex)
r <- do.call(ivmte, args)
r
#> 
#> Bounds on the target parameter: [-0.08484221, 0.08736006]
#> Audit terminated successfully after 2 rounds

The specification of each uniquely defined spline is stored in the list r$splines.dict. For example, if m0 contained only the terms uSplines(degree = 0, knots = 0.5) and x:uSplines(degree = 0, knots = 0.5), then the list r$splines.dict$m0 will contain a single entry, since the two terms above contain the same spline.

specs0 <- r$splines.dict$m0[[1]]
specs0
#> $degree
#> [1] 2
#> 
#> $intercept
#> [1] TRUE
#> 
#> $knots
#> [1] 0.3333333 0.6666667
#> 
#> $gstar.index
#> [1] 1

Since the splines must be constructed as part of the estimation procedure, the variable names for the basis splines are automatically generated according to a naming convention to ensure that each coefficient can be mapped to the correct basis. For example, consider the coefficient estimates for m0 corresponding to the lower bound on the treatment effect, which are stored in r$gstar.coef$min.g0

r$gstar.coef$min.g0
#> [m0]u0S1.1:1 [m0]u0S1.2:1 [m0]u0S1.3:1 [m0]u0S1.4:1 [m0]u0S1.5:1 
#>    0.5134883    0.5116711    0.5855708    0.5917033    0.5913861

• The first three characters of each variable name, u0S, indicate that the variables corresponds to a spline in m0. A basis splines in m1 would instead be assigned a name beginning with u1S.
• The next digit is an index assigned to each uniquely defined spline. The corresponding specification in r$splines.dict is the one with the same index in r$splines.dict$gstar.index. This is required to differentiate between splines with the same number of basis functions.
• The number that follow the period indexes the basis spline.
• As is standard in the R syntax, a colon is used to denote an interaction term. In order to avoid confusion between basis splines and variables in the data set, the names of basis splines always indicate an interaction. In this example, since the spline is not actually interacted with any variable, the name of each basis spline indicates that the function is interacted with the constant 1.

For example, u0S1.4:1 refers to the fourth basis function of the first spline in m0; whereas u1S2.2:x refers to the second basis function of the second spline in m1, interacted with the variable x.

To plot the MTR, users simply need to construct the appropriate design matrix and multiply it with the coefficient estimates. Below, a design matrix for m0 for a grid of 101 points over the unit interval is constructed using the command bSpline from the splines2 package. While ivmte assumes the boundary knots are always 0 and 1, the user will have to explicitly declare the boundary knots when using the bSpline command. Multiplying the design matrix by r$gstar.coef$min.g0 generates the fitted values for m0 associated with the lower bound of the treatment effect. Likewise, multiplying the design matrix by r$gstar.coef$max.g0 generates the fitted values for m0 associated with the upper bound.

uSeq <- seq(0, 1, by = 0.01)
dmat0 <- bSpline(x = uSeq,
                      degree = specs0$degree,
                      intercept = specs0$intercept,
                      knots = specs0$knots,
                      Boundary.knots = c(0, 1))
m0.min <- dmat0 %*% r$gstar.coef$min.g0
m0.max <- dmat0 %*% r$gstar.coef$max.g0

The analogous steps can be performed to obtain the fitted values for m1. Taking the difference of the fitted values for m1 and m0 yields an MTE curve. However, unless there is point identification, the MTR and MTE curves are optimal but not unique. That is, the curves either maximize or minimize the treatment effect parameter, but there are other MTR and MTE curves that are observationally equivalent and yield the same maximal or minimal value of the treatment effect.

Below are plots of the MTR and MTE as functions of unobserved heterogeneity u. The figures on the left correspond to the lower bound of the treatment effect, and the figures on the right correspond to the upper bound.

mte.min <- m1.min - m0.min
mte.max <- m1.max - m0.max

In the case of the MTE associated with the lower bound, the monotonicity constraints are all binding, resulting in a constant MTE. If the plots do not satisfy all the shape constraints, this implies the audit grid is not large enough, and that audit.nu should be increased.

Plotting weights

This section presents an example of how to plot the average weights associated with the target parameter and IV-like estimands, which may be of interest to the user.

Continuing with the model specification from the previous section, information on the target weights for the treated individuals are stored in the list r$gstar.weights$w1, and the target weights for the untreated are stored in the list r$gstar.weights$w0. These lists contain three entries:

1. $lb: A vector of the lower bounds for the values of u where the weight is not 0.
2. $ub: A vector of the upper bounds for the values of u where the weight is not 0.
3. $multiplier: A vector of the weights assigned to agents with u between $lb and $ub.

The values of $lb and $ub are obtained from an agent’s propensity to take up treatment. The weight assigned to agents outside of that interval is 0.

The list r$s.set contains all the information from the IV-like estimands, including the treated and untreated weights. Information relevant to the first estimand is stored in the list r$s.set$s1$; information relevant to the second estimand is stored in the list r$s.set$s2, and so on. The weights for the first estimand are contained in r$s.set$s1$w0 and r$s.set$s1$w1, both of which are lists that take the same structure as described earlier for r$gstar.weights$w0 and r$gstar.weights$w1.

Below, the treated weights for the target parameter and IV-like estimands are organized into matrices with columns for the lower bound, upper bound, and multiplier.

## Target weights
w1 <- cbind(r$gstar.weights$w1$lb,
                  r$gstar.weights$w1$ub,
                  r$gstar.weights$w1$multiplier)
## IV-like estimand weights
sw1 <- cbind(r$s.set$s1$w1$lb,
             r$s.set$s1$w1$ub,
             r$s.set$s1$w1$multiplier)
sw2 <- cbind(r$s.set$s2$w1$lb,
             r$s.set$s2$w1$ub,
             r$s.set$s2$w1$multiplier)
sw3 <- cbind(r$s.set$s3$w1$lb,
             r$s.set$s3$w1$ub,
             r$s.set$s3$w1$multiplier)
sw4 <- cbind(r$s.set$s4$w1$lb,
             r$s.set$s4$w1$ub,
             r$s.set$s4$w1$multiplier)
## Assign column names
colnames(w1) <-
    colnames(sw1) <-
    colnames(sw2) <-
    colnames(sw3) <-
    colnames(sw4) <- c("lb", "ub", "mp")

Since the propensity score model is simply morekids ~ samesex, and samesex is a binary variable, there are only two values of the propensity score. These two values partition the unit interval into three regions, and the average weights will vary across these three regions. These propensity scores can be recovered from the column ub in any of the matrices constructed above.

pscore <- sort(unique(w1[, "ub"]))
pscore
#> [1] 0.3021445 0.3610127

More generally, the propensity scores determine the upper bound for the region where the weights are non-zero for the treated weights associated with the IV-like estimands. In the case of the untreated weights associated with the IV-like estimands, the propensity score determines the lower bound.

The code below demonstrates how to calculate the average weights for each interval, and stores the results in a data.frame that will be used to generate the plot. The analogous calculations can be performed to estimate the average weights for the untreated agents.

avg1 <- NULL ## The data.frame that will contain the average weights
i <- 0 ## An index for the type of weight
for (j in c('w1', 'sw1', 'sw2', 'sw3', 'sw4')) {
    dt <- data.frame(get(j))
    avg <- rbind(
        ## Average for u in [0, pscore[1])
        c(s = i, d = 1, lb = 0, ub = pscore[1],
          avgWeight = mean(dt$mp)),
        ## Average for u in [pscore[1], pscore[2])
        c(s = i, d = 1, lb = pscore[1], ub = pscore[2],
          avgWeight = mean(as.integer(dt$ub ==
                                      pscore[2]) * dt$mp)),
        ## Average for u in [pscore[2], 1]
        c(s = i, d = 1, lb = pscore[2], ub = 1, avgWeight = 0))
    avg1 <- rbind(avg1, avg)
    i <- i + 1
}
avg1 <- data.frame(avg1)

• The first region, [0, pscore[1]), contains agents who take up treatment regardless of whether samesex = FALSE or samesex = TRUE. The average weight can therefore be estimated simply by taking the average of the weights assigned to each agent.
• The second region, [pscore[1], pscore[2]), contains agents who would take up treatment if samesex = TRUE, but would not take up treatment if samesex = FALSE. The weights for agents with samesex = FALSE are thus 0 is in this region.
• Finally, the third region [pscore[2], 1], contains agents who will not take up treatment regardless of the value of samesex. Since the object of interest is the weights of the treated agents, the average weight in this third region is necessarily 0.

The data.frame created above that will be used to generate the plot for the average treated weights takes on the following form.

• The first column indicates the type of weight. A value of 0 indicates the weight corresponds to the target parameter. Integers greater than 0 indicate the weight corresponds to the IV-like estimand with the same index.
• The second column indicates that the weights above correspond to the treated agents.
• The third and fourth columns indicate the region in the unit interval that the average weights correspond to.
• The final column contains the average weights.

Adjusting for overlaps, the table above generates the plot below on the right. The analogous table containing the average untreated weights generates the plot on the left. For clarity, the weights for associated with the intercept have been omitted from both plots.

Help, Feature Requests and Bug Reports

Please post an issue on the GitHub repository.

References