MAle Lineage ANalysis by simulating genealogies backwards and imposing short tandem repeats (STR) mutations forwards. Intended for forensic Y chromosomal STR (Y-STR) haplotype analyses. Numerous analyses are possible, e.g. number of matches and meiotic distance to matches. Refer to papers mentioned in citation("malan") (DOI's: <doi:10.1371/journal.pgen.1007028>, <doi:10.21105/joss.00684> and <doi:10.1016/j.fsigen.2018.10.004>).
| Version: | 1.0.2 |
| Depends: | R (≥ 2.10), dplyr (≥ 0.7.3), tidygraph (≥ 1.0.0.9999) |
| Imports: | Rcpp (≥ 0.12.7), RcppProgress (≥ 0.2.1), RcppArmadillo (≥ 0.9.880.1.0), igraph (≥ 1.0.1), tibble (≥ 1.1), magrittr (≥ 1.5), methods |
| LinkingTo: | Rcpp, RcppArmadillo, RcppProgress |
| Suggests: | knitr, rmarkdown, testthat, ggraph, dirmult, Rmpfr |
| Published: | 2020-06-25 |
| Author: | Mikkel Meyer Andersen [aut, cre] |
| Maintainer: | Mikkel Meyer Andersen <mikl at math.aau.dk> |
| BugReports: | https://github.com/mikldk/malan/issues |
| License: | GPL-2 | file LICENSE |
| NeedsCompilation: | yes |
| SystemRequirements: | C++11 |
| Citation: | malan citation info |
| Materials: | README NEWS |
| CRAN checks: | malan results |
| Reference manual: | malan.pdf |
| Vignettes: |
Case study: Partial profiles Introduction |
| Package source: | malan_1.0.2.tar.gz |
| Windows binaries: | r-devel: malan_1.0.2.zip, r-release: malan_1.0.2.zip, r-oldrel: malan_1.0.2.zip |
| macOS binaries: | r-release (arm64): malan_1.0.2.tgz, r-oldrel (arm64): malan_1.0.2.tgz, r-release (x86_64): malan_1.0.2.tgz, r-oldrel (x86_64): malan_1.0.2.tgz |
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