MAPpoly version 0.3.1

• Minor modifications to the test functions
• Changed ‘smacof’ package to suggested

MAPpoly version 0.3.0

• Added function est_pairwise_rf2 to avoid memory overflow in personal computers when estimating recombination fraction in large number of markers.
• Added Vignette
• Added function ‘export_qtlpoly’
• Added function ‘filter_individuals’
• Changed the name of function ‘calc_homoprob’ to ‘calc_homologprob’

MAPpoly version 0.2.3

• Added function plot_GIC
• Updated functions est_rf_hmm_sequential and read_fitpoly
• Verification for high-prec system support
• Added LazyDataCompression: xz in DESCRIPTION file

MAPpoly version 0.2.2

• Suggested packages are used conditionally, following §1.1.3.1 of ‘Writing R Extensions’.

MAPpoly version 0.2.1

• Added estimation of two-point recombination fraction using genotype probabilities
• Added ‘read_fitpoly’ function
• New graphical feature in function ‘rf_snp_filt’
• Added option to plot large recombination fraction matrix using cell aggregation for a given order
• Added estimation of map distance using the MDSMap package procedure (projects the MDS order onto a single dimension using principal curves)