This vignette provide installation for mixKernel instructions.

Installation of python dependencies

The following python modules are required for the functions performing feature selection in mixKernel: autograd, scipy, sklearn, numpy

pip3 install autograd
pip3 install scipy
pip3 install sklearn
pip3 install numpy

Installation of Bioconductor dependencies

Two Bioconductor packages are required for mixKernel installation: mixOmics and phyloseq:

install.packages("BiocManager")
BiocManager::install("mixOmics")
BiocManager::install("phyloseq")

mixKernel installation

Finally the installation is completed with:

install.packages("mixKernel")