R Analysis suite for viral RNA dependent RNA polymerase (RdRP).
Statistical and meta-data analysis of 'palmscan' output and 'palmDB'/
'DIAMOND' alignment files. Cross reference an input RNA virus against
145,000 RdRP identified in the Serratus project.
| Version: |
0.0.3 |
| Depends: |
R (≥ 3.5.0), dplyr, ggplot2 (≥ 3.3.3) |
| Imports: |
dbplyr, downloadthis, DBI, DT, ggplotify, ggwordcloud, ggExtra, grDevices, gridExtra (≥ 2.3), htmltools, htmlwidgets, leaflet, methods, plotly, rmarkdown, RPostgreSQL, scales, stats, utils, viridisLite |
| Suggests: |
sf, rnaturalearth, rnaturalearthdata |
| Published: |
2021-10-15 |
| Author: |
Artem Babaian [aut, cre] |
| Maintainer: |
Artem Babaian <artem at rRNA.ca> |
| BugReports: |
https://github.com/ababaian/palmid/issues |
| License: |
AGPL-3 |
| URL: |
https://serratus.io/palmid |
| NeedsCompilation: |
no |
| Materials: |
README NEWS |
| CRAN checks: |
palmid results |