Provides a simple interface for extracting various elements from
the publicly available PubMed XML files, incorporating PubMed's regular
updates, and combining the data with the NIH Open Citation Collection. See
Schoenbachler and Hughey (2021) <doi:10.7717/peerj.11071>.
| Version: |
1.0.10 |
| Depends: |
R (≥ 3.6) |
| Imports: |
curl (≥ 4.3.2), data.table (≥ 1.12.2), DBI (≥ 1.1.0), foreach (≥ 1.5.0), glue (≥ 1.4.2), iterators (≥ 1.0.12), jsonlite (≥ 1.7.0), R.utils (≥ 2.10.1), RCurl (≥ 1.98), withr (≥ 2.3.0), xml2 (≥ 1.3.3) |
| Suggests: |
bigrquery (≥ 1.3.2), doParallel (≥ 1.0.16), RMariaDB (≥
1.0.9), RPostgres (≥ 1.2.0), RSQLite (≥ 2.2.0), testthat (≥
2.3.2), knitr, rmarkdown |
| Published: |
2022-04-27 |
| Author: |
Jake Hughey [aut, cre],
Josh Schoenbachler [aut],
Elliot Outland [aut] |
| Maintainer: |
Jake Hughey <jakejhughey at gmail.com> |
| License: |
GPL-2 |
| URL: |
https://pmparser.hugheylab.org,
https://github.com/hugheylab/pmparser |
| NeedsCompilation: |
no |
| SystemRequirements: |
head, unzip, sqlite |
| Materials: |
NEWS |
| CRAN checks: |
pmparser results |