rCNV: Detect Copy Number Variants from SNPs Data

Functions in this package will import filtered variant call format (VCF) files of SNPs data and generate data sets to detect copy number variants, visualize them and do downstream analyses with copy number variants(e.g. Environmental association analyses).

Version: 1.0.0
Depends: R (≥ 3.6.0)
Imports: data.table, graphics, colorspace, R.utils, qgraph
Suggests: rmarkdown, knitr, testthat (≥ 3.0.0), covr
Published: 2022-04-06
Author: Piyal Karunarathne ORCID iD [aut, cre], Pascal Milesi ORCID iD [aut], Qiujie Zhou ORCID iD [aut]
Maintainer: Piyal Karunarathne <piyalkarumail at yahoo.com>
BugReports: https://github.com/piyalkarum/rCNV/issues
License: AGPL (≥ 3)
URL: https://piyalkarum.github.io/rCNV/
NeedsCompilation: no
Materials: README NEWS
CRAN checks: rCNV results

Documentation:

Reference manual: rCNV.pdf

Downloads:

Package source: rCNV_1.0.0.tar.gz
Windows binaries: r-devel: rCNV_1.0.0.zip, r-release: rCNV_1.0.0.zip, r-oldrel: rCNV_1.0.0.zip
macOS binaries: r-release (arm64): rCNV_1.0.0.tgz, r-oldrel (arm64): rCNV_1.0.0.tgz, r-release (x86_64): rCNV_1.0.0.tgz, r-oldrel (x86_64): rCNV_1.0.0.tgz

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