raveio 0.0.7

Major changes:

• Added PipelineTools class and wrapped constructor raveio::pipeline to load common utility tools needed to run the pipeline
• Added module templates for RAVE-2.0
• Allow import_electrode_table to import table without replacing existing electrode files with dry_run option

raveio 0.0.6

Major changes:

• Added read_mat2 to allow reading Matlab files stored in HDF5 formats
• Allow subject instances to store and retrieve default key-value pairs via set_default and get_default methods
• Disable multicore by default, so users can use their own plan provided by the future package
• Added location and signal types to electrodes
• Added function to perform baseline via power_baseline directly from repository
• Added multiple repository types for RAVE subjects with identical key as signature
• Added with_future_parallel to enable multicore features in the expressions
• Added reference signal class
• Use ravedash log system provided if the package is installed
• Speed-up raveio_getopt and raveio_setopt
• Added validate_time_window to return intervals of time windows
• Added save_json and load_json to handle JSON format using jsonlite package
• Allow to set threeBrain template brain
• Added import_electrode_table to import electrode table with coordinates in T1 or MNI space to tkrRAS
• Electrodes can load corresponding block data
• Added normalize_commandline_path and cmd_* functions to search for external system commands such as FreeSurfer, FSL-FLIRT, dcm2niix
• Added backup_file to back up existing files instead of overwriting
• Allow to download and install rave-server as services (currently only works on OSX)

Changes to pipeline framework:

• Implemented and matured reproducible pipeline framework
• Added R-markdown template to build pipelines
• Allow pipelines to run in another process and can kill the process anytime
• Pipelines run in async mode works in shiny applications
• Created an R6 class for pipeline results in promises way
• Allow to clear cache files at subject level
• Async pipelines can have callback functions at each check, useful for monitoring the progress

Enhancements:

• save_yaml can write to connections
• rave_imports runs in parallel in native2 format
• Added an option to disable fork-clusters (enabled by default on OSX and Linux)
• Allows EDF files to be partially read
• Added data format entry to the preprocess instance, allowing following modules to be aware of the raw data format
• ravetools respects tensor_temp_path as its temporary path

raveio 0.0.5

Major changes:

• Rewind back to hdf5r as it passes the CRAN checks now
• Fixed HDF5 bugs
• Added pipeline functions to self-expand RAVE
• Added pipeline templates

raveio 0.0.4

Major changes:

• removed lazyarray, pryr
• fixed get_ram errors when system command not found
• disabled support on Solaris
• changed hdf5r to rhdf5

raveio 0.0.3

Initial CRAN submission.