A negative binomial mixed-effects (NBME) model to detect nonparallel differential expression(NPDE) genes and parallel differential expression(PDE) genes in the time course RNA-seq data.
| Version: | 1.0.4 |
| Depends: | R (≥ 3.0.1) |
| Imports: | gss, mgcv, lattice, pheatmap, reshape, grDevices, graphics |
| Suggests: | rmarkdown, knitr |
| Published: | 2019-02-09 |
| Author: | Fan Gao, Xiaoxiao Sun |
| Maintainer: | Fan Gao <fangaohz at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| CRAN checks: | timeSeq results |
| Reference manual: | timeSeq.pdf |
| Vignettes: |
Inferring differential expressed genes in time course RNA-Seq data with the timeSeq package |
| Package source: | timeSeq_1.0.4.tar.gz |
| Windows binaries: | r-devel: timeSeq_1.0.4.zip, r-release: timeSeq_1.0.4.zip, r-oldrel: timeSeq_1.0.4.zip |
| macOS binaries: | r-release (arm64): timeSeq_1.0.4.tgz, r-oldrel (arm64): timeSeq_1.0.4.tgz, r-release (x86_64): timeSeq_1.0.4.tgz, r-oldrel (x86_64): timeSeq_1.0.4.tgz |
| Old sources: | timeSeq archive |
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