utr.annotation: Annotate Variants in the Untranslated Regions
A fast, user-friendly tool for annotating potential deleterious variants in the untranslated regions for both human and mouse species. Y Liu, JD Dougherty (2021) <doi:10.1101/2021.06.23.449510>.
| Version: | 1.0.4 |
| Depends: | R (≥ 3.5.0) |
| Imports: | parallel, doParallel, data.table, readr, stringr, biomaRt, vcfR, Biostrings, dplyr, tidyr, keras, AnnotationHub, ensembldb, AnnotationFilter, BiocGenerics, GenomicFeatures, GenomicRanges, IRanges, foreach, rtracklayer, stats, utils, xml2 |
| Suggests: | testthat, knitr, rmarkdown, ggplot2 |
| Published: | 2021-08-23 |
| Author: | Yating Liu  [aut,
cre],
Joseph D. Dougherty
[aut] |
| Maintainer: | Yating Liu <yatinghust at gmail.com> |
| License: | GPL (≥ 3) |
| NeedsCompilation: | no |
| SystemRequirements: | Linux or MacOS Intel chip tensorflow (1.14.0) |
| Materials: | README NEWS |
| CRAN checks: | utr.annotation results |
Documentation:
| Reference manual: | utr.annotation.pdf |
| Vignettes: |
Introduction |
Downloads:
| Package source: | utr.annotation_1.0.4.tar.gz |
| Windows binaries: | r-devel: utr.annotation_1.0.4.zip, r-release: utr.annotation_1.0.4.zip, r-oldrel: utr.annotation_1.0.4.zip |
| macOS binaries: | r-release (arm64): utr.annotation_1.0.4.tgz, r-oldrel (arm64): utr.annotation_1.0.4.tgz, r-release (x86_64): utr.annotation_1.0.4.tgz, r-oldrel (x86_64): utr.annotation_1.0.4.tgz |
| Old sources: | utr.annotation archive |
Linking:
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