Fit Models Derived from Point Processes to Species Distributions using 'inlabru'

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Documentation for package ‘PointedSDMs’ version 1.0.6

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

Altitude	SpatialPixelsDataFrame containing Altitude covariate
BBA	Dataset of setophaga caerulescens obtained from the Pennsylvania Atlas of Breeding Birds.
BBS	Dataset of setophaga caerulescens obtained from the North American Breeding Bird survey across Pennsylvania state.
blockedCV	_blockedCV_: run spatial blocked cross-validation on the integrated model.
blockedCV-class	Export class blockedCV
bruSDM-class	Export bru_sdm class
bruSDM_predict-class	Export class predict_bru_sdm
changeCoords	_changeCoords_: function used to change coordinate names.
checkCoords	_checkCoords_: function used to check coordinate names.
checkVar	_checkVar_: Function used to check variable names.
data2ENV	_data2ENV_: function used to move objects from one environment to another.
dataOrganize	R6 class to assist in reformatting the data to be used in dataSDM.
dataSDM	R6 class for creating a 'dataSDM' object.
dataSet	Internal function used to standardize datasets, as well as assign metadata.
datasetOut	_datasetOut_: function that removes a dataset out of the main model, and calculates some cross-validation score.
datasetOut-class	Export class bru_sdm_leave_one_out
eBird	data.frame object containing solitary tinamou observations from eBird
eBird_caerulescens	Dataset of setophaga caerulescens across Pennsylvania state.
eBird_fusca	Dataset of setophaga fusca across Pennsylvania state.
eBird_magnolia	Dataset of setophaga magnolia across Pennsylvania state.
elev_raster	Raster object containing the elevation across Pennsylvania state.
Forest	SpatialPixelsDataFrame containing Forest covariate
Gbif	data.frame object containing solitary tinamou observations from Gbif
intModel	_intModel_: Function used to initialize the integrated species distribution model.
makeLhoods	_makeLhoods_: function to make likelihoods.
nameChanger	_nameChanger_: function to change a variable name.
NLCD_canopy_raster	Raster object containing the canopy cover across Pennsylvania state.
NPP	SpatialPixelsDataFrame containing NPP covariate
Parks	data.frame object containing solitary tinamou observations from Parks
plot.bruSDM_predict	Generic plot function for 'predict_bru_sdm'.
predict.bruSDM	Generic predict function for 'bru_SDM' objects.
print.blockedCV	Print function for 'blockedCV'.
print.bruSDM	Generic print function for 'bruSDM'.
print.bruSDM_predict	Generic print function for 'bru_sdm_predict'.
print.datasetOut	Generic print function for 'datasetOut'.
region	SpatialPolygons object containing the boundary region for solitary tinamouc
runModel	_runModel_: function used to run the integrated model.
SolitaryTinamou	List of all data objects used for the solitary tinamou vignette.
summary.bruSDM	Generic summary function for 'bruSDM'.