MCMC for Spike and Slab Regression


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Documentation for package ‘BoomSpikeSlab’ version 1.0.0

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CoefficientGroup Shrinking Regression Coefficients
GetPredictorMatrix GetPredictorMatrix
IndependentSpikeSlabPrior A spike and slab prior assuming a priori independence.
lm.spike Spike and slab regression
logit.spike Spike and slab logistic regression
LogitPrior Zellner Prior for Logistic Regression
LogitZellnerPrior Zellner Prior for Logistic Regression
mlm.spike Spike and slab multinomial logistic regression
model.matrix.glm.spike Construct Design Matrices
MultinomialLogitSpikeSlabPrior Create a spike and slab prior for use with mlm.spike.
NestedRegression Nested Regression
plot.lm.spike Plot the results of a spike and slab regression.
plot.logit.spike Plot a 'logit.spike' object
plot.poisson.spike Plot a 'poisson.spike' object
plot.probit.spike Plot a 'logit.spike' object
plot.qreg.spike Plot the results of a spike and slab regression.
PlotLmSpikeCoefficients Plot Coefficients.
PlotLmSpikeResiduals Residual plot for lm.spike
PlotLogitSpikeFitSummary Plot Logit or Probit Fit Summary
PlotLogitSpikeResiduals Residual plot for 'logit.spike' objects.
PlotMarginalInclusionProbabilities Plot marginal inclusion probabilities.
PlotModelSize Plot a distribution of model size
PlotProbitSpikeFitSummary Plot Logit or Probit Fit Summary
PlotProbitSpikeResiduals Residual plot for 'logit.spike' objects.
poisson.spike Spike and slab Poisson regression
PoissonZellnerPrior Zellner Prior for Poisson Regression
predict.lm.spike Predictions using spike-and-slab regression.
predict.logit.spike Predictions using spike-and-slab regression.
predict.poisson.spike Predictions using spike-and-slab regression.
predict.probit.spike Predictions using spike-and-slab regression.
predict.qreg.spike Predictions using spike-and-slab regression.
print.summary.lm.spike Print method for spikeslab objects.
print.summary.logit.spike Print method for spikeslab objects.
probit.spike Spike and slab probit regression
qreg.spike Quantile Regression
residuals.lm.spike Extract lm.spike Residuals
ShrinkageRegression Shrinking Regression Coefficients
spikeslab Spike and slab regression
SpikeSlabGlmPrior Zellner Prior for Glm's
SpikeSlabPrior Create a spike and slab prior for use with lm.spike.
SpikeSlabPriorBase Base class for spike and slab priors
StudentIndependentSpikeSlabPrior Spike and Slab Prior for Regressions with Student T Errors
StudentSpikeSlabPrior Spike and Slab Prior for Student-T Regression
SummarizeSpikeSlabCoefficients Numerical summaries of coefficients from a spike and slab regression.
summary.lm.spike Numerical summaries of the results from a spike and slab regression.
summary.logit.spike Numerical summaries of the results from a spike and slab logistic regression.
summary.probit.spike Numerical summaries of the results from a spike and slab logistic regression.