DSAIDE-package | DSAIDE: A package to learn about Dynamical Systems Approaches to Infectious Disease Epidemiology |
DSAIDE | DSAIDE: A package to learn about Dynamical Systems Approaches to Infectious Disease Epidemiology |
dsaidemenu | The main menu for the DSAIDE package |
generate_documentation | A helper function for the UI part of the Shiny apps |
generate_fctcall | A function that produces a call to a simulator functions for specific settings |
generate_ggplot | A helper function that takes result from the simulators and produces plots |
generate_plotly | A helper function that takes result from the simulators and produces plots |
generate_shinyinput | A helper function that takes a model and generates the shiny UI elements for the analyze tab |
generate_text | A helper function that takes result from the simulators and produces text output |
run_model | A function that runs a DSAIRM/DSAIDE app |
simulate_directtransmission_ode | Simulation of a compartmental infectious disease transmission model illustrating different types of direct transmission |
simulate_environmentaltransmission_ode | Environmental Transmission model |
simulate_evolution_stochastic | Stochastic simulation of a compartmental SIR-type model with wild-type and mutant strains and treatment |
simulate_heterogeneity_ode | Simulation of a compartmental infectious disease transmission model with 2 types of hosts |
simulate_idcharacteristics_ode | Simulation of an infectious disease transmission model with multiple compartments |
simulate_idcontrol_ode | Simulation of a compartmental infectious disease transmission model including different control mechanisms |
simulate_idpatterns_ode | Simulation of a compartmental infectious disease transmission model including seasonality |
simulate_modelexploration_sir | Simulation to illustrate parameter scan of the basic SIR model with births and deaths #' |
simulate_multipathogen_ode | Simulation of a compartmental infectious disease transmission model with 2 types of pathogens |
simulate_reproductivenumber_ode | Simulation of a compartmental infectious disease transmission model to study the reproductive number |
simulate_seir_stochastic | Stochastic simulation of an SEIR-type model |
simulate_sirdemographic_ode | Basic SIR model with births and deaths |
simulate_sirdemographic_stochastic | Stochastic simulation of an SIR-type model with births and deaths |
simulate_sir_discrete | Basic discrete time SIR model |
simulate_sir_ode | Basic SIR model |
simulate_usanalysis_sir | Simulation to illustrate uncertainty and sensitivity analysis |
simulate_vectortransmission_ode | Vector transmission model |