HapEstXXR-package | Mulit-locus stepwise regression (MSR) |
allele1to2 | Convert genotype matrix from two different types |
allele1toR | Convert genotype matrix from two different types |
allele2to1 | Convert genotype matrix from two different types |
allele2toR | Convert genotype matrix from two different types |
alleleRto1 | Convert genotype matrix from two different types |
alleleRto2 | Convert genotype matrix from two different types |
catt | Cochrane armitage trend test (CATT) for SNP genotypes |
coding.baseline.allele | Standardization of coding alleles |
dec2bin | Decimal To Binary Conversion |
hapest.caco | single haplotype test |
hapest.gaussian | single haplotype test |
HapEstXXR | Mulit-locus stepwise regression (MSR) |
itegeppXXR | Haplotype estimation routine for single individual data |
maf | Minor alle frequencies |
makeHaploviewInputFile | Make Haploview input files |
makePlinkInputFile | Make PLINK input files |
msr | Multi-locus stepwise regression |
msr.binomial.forward.adjusted | Multi-locus stepwise regression |
msr.binomial.forward.unadjusted | Multi-locus stepwise regression |
msr.binomial.haplotype.test.adjusted | Multi-locus stepwise regression |
msr.binomial.haplotype.test.unadjusted | Multi-locus stepwise regression |
msr.families.unadjusted | Multi-locus stepwise regression |
msr.gaussian.forward.adjusted | Multi-locus stepwise regression |
msr.gaussian.forward.unadjusted | Multi-locus stepwise regression |
msr.gaussian.haplotype.test.adjusted | Multi-locus stepwise regression |
msr.gaussian.haplotype.test.unadjusted | Multi-locus stepwise regression |
multi.snp.test | Internal function used for multi-locus associations tests. |
order.families | Ordering of nuclear family data |
powerset | Generating power set of a set |
read.data | Read data from different input files |
read.haploview | Read a haploview dataset |
single.haplotype.test | single haplotype test |
single.haplotype.test.binomial | single haplotype test |
single.haplotype.test.families | single haplotype test |
single.haplotype.test.gaussian | single haplotype test |
single.haplotype.test.survival | single haplotype test |
single.snp.test | Regression analysis with single SNP genotypes as independent variable |
single.snp.test.binomial | Regression analysis with single SNP genotypes as independent variable |
single.snp.test.casecohort | Regression analysis with single SNP genotypes as independent variable |
single.snp.test.casecohort.prentice | Regression analysis with single SNP genotypes as independent variable |
single.snp.test.families | Regression analysis with single SNP genotypes as independent variable |
single.snp.test.gaussian | Regression analysis with single SNP genotypes as independent variable |