Multi-Locus Stepwise Regression


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Documentation for package ‘HapEstXXR’ version 0.1-8

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HapEstXXR-package Mulit-locus stepwise regression (MSR)
allele1to2 Convert genotype matrix from two different types
allele1toR Convert genotype matrix from two different types
allele2to1 Convert genotype matrix from two different types
allele2toR Convert genotype matrix from two different types
alleleRto1 Convert genotype matrix from two different types
alleleRto2 Convert genotype matrix from two different types
catt Cochrane armitage trend test (CATT) for SNP genotypes
coding.baseline.allele Standardization of coding alleles
dec2bin Decimal To Binary Conversion
hapest.caco single haplotype test
hapest.gaussian single haplotype test
HapEstXXR Mulit-locus stepwise regression (MSR)
itegeppXXR Haplotype estimation routine for single individual data
maf Minor alle frequencies
makeHaploviewInputFile Make Haploview input files
makePlinkInputFile Make PLINK input files
msr Multi-locus stepwise regression
msr.binomial.forward.adjusted Multi-locus stepwise regression
msr.binomial.forward.unadjusted Multi-locus stepwise regression
msr.binomial.haplotype.test.adjusted Multi-locus stepwise regression
msr.binomial.haplotype.test.unadjusted Multi-locus stepwise regression
msr.families.unadjusted Multi-locus stepwise regression
msr.gaussian.forward.adjusted Multi-locus stepwise regression
msr.gaussian.forward.unadjusted Multi-locus stepwise regression
msr.gaussian.haplotype.test.adjusted Multi-locus stepwise regression
msr.gaussian.haplotype.test.unadjusted Multi-locus stepwise regression
multi.snp.test Internal function used for multi-locus associations tests.
order.families Ordering of nuclear family data
powerset Generating power set of a set
read.data Read data from different input files
read.haploview Read a haploview dataset
single.haplotype.test single haplotype test
single.haplotype.test.binomial single haplotype test
single.haplotype.test.families single haplotype test
single.haplotype.test.gaussian single haplotype test
single.haplotype.test.survival single haplotype test
single.snp.test Regression analysis with single SNP genotypes as independent variable
single.snp.test.binomial Regression analysis with single SNP genotypes as independent variable
single.snp.test.casecohort Regression analysis with single SNP genotypes as independent variable
single.snp.test.casecohort.prentice Regression analysis with single SNP genotypes as independent variable
single.snp.test.families Regression analysis with single SNP genotypes as independent variable
single.snp.test.gaussian Regression analysis with single SNP genotypes as independent variable