Gene-Based Association Analysis for Complex Traits


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Documentation for package ‘KMgene’ version 1.2

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CoxKM KM for Survival Traits in GWAS Data (calculate p-value)
CoxKM_data This is survival data
FbKM KM for Binary Traits in Familial GWAS Data (calculate p-value)
FbKMO Optimal KM for Non-continuous Traits in Familial GWAS Data (calculate p-value)
FbKMO_Null_Model Optimal KM for Binary Traits in Familial GWAS Data (fit null model)
FbKM_charID This is binary family data with character IDs
fbkm_c_covariates This is binary family data with character IDs
fbkm_c_gene This is binary family data with character IDs
fbkm_c_geneid This is binary family data with character IDs
fbkm_c_weights This is binary family data with character IDs
fbkm_c_y This is binary family data with character IDs
FbKM_Null_Model KM for Binary Traits in Familial GWAS Data (fit null model)
FbKM_numID This is binary family data numeric IDs
fbkm_n_covariates This is binary family data numeric IDs
fbkm_n_gene This is binary family data numeric IDs
fbkm_n_geneid This is binary family data numeric IDs
fbkm_n_weights This is binary family data numeric IDs
fbkm_n_y This is binary family data numeric IDs
FKM KM for continuous Traits in Familial GWAS Data (calculate p-value)
FKMO Optimal KM for continuous Traits in Familial GWAS Data (calculate p-value)
FKMO_Null_Model Optimal KM for continuous Traits in Familial GWAS Data (fit null model)
FKM_charID This is continuous family data with character IDs
fkm_c_covariates This is continuous family data with character IDs
fkm_c_gene This is continuous family data with character IDs
fkm_c_geneid This is continuous family data with character IDs
fkm_c_weights This is continuous family data with character IDs
fkm_c_y This is continuous family data with character IDs
FKM_Null_Model KM for continuous Traits in Familial GWAS Data (fit null model)
FKM_numID This is continuous family data numeric IDs
fkm_n_covariates This is continuous family data numeric IDs
fkm_n_gene This is continuous family data numeric IDs
fkm_n_geneid This is continuous family data numeric IDs
fkm_n_weights This is continuous family data numeric IDs
fkm_n_y This is continuous family data numeric IDs
LKM KM for Quantitative Traits in Longitudinal GWAS Data (calculate p-value)
LKMO Optimal KM for Quantitative Traits in Longitudinal GWAS Data (calculate p-value)
LKMO_Null_Model Optimal KM for Quantitative Traits in Longitudinal GWAS Data (fit null model)
LKM_charID This is continuous longitudinal data with character IDs
lkm_c_covariates This is continuous longitudinal data with character IDs
lkm_c_gene This is continuous longitudinal data with character IDs
lkm_c_gid This is continuous longitudinal data with character IDs
lkm_c_weights This is continuous longitudinal data with character IDs
lkm_c_y This is continuous longitudinal data with character IDs
LKM_Int KM for Traits by Time Interaction in Longitudinal GWAS Data
lkm_int_n_covariates This is continuous longitudinal data with numeric IDs
lkm_int_n_gene This is continuous longitudinal data with numeric IDs
lkm_int_n_gid This is continuous longitudinal data with numeric IDs
lkm_int_n_weights This is continuous longitudinal data with numeric IDs
lkm_int_n_y This is continuous longitudinal data with numeric IDs
LKM_Null_Model KM for Quantitative Traits in Longitudinal GWAS Data (fit null model)
LKM_numID This is continuous longitudinal data with numeric IDs
LKM_numID_int This is continuous longitudinal data with numeric IDs
lkm_n_covariates This is continuous longitudinal data with numeric IDs
lkm_n_gene This is continuous longitudinal data with numeric IDs
lkm_n_gid This is continuous longitudinal data with numeric IDs
lkm_n_weights This is continuous longitudinal data with numeric IDs
lkm_n_y This is continuous longitudinal data with numeric IDs
MFKM KM for Quantitative Traits in Multivariate Family GWAS Data (calculate p-value)
MFKMO Optimal KM for Quantitative Traits in Multivariate Family GWAS Data (calculate p-value)
MFKMO_Null_Model Optimal KM for Quantitative Traits in Multivariate Family GWAS Data (fit null model)
MFKM_charID This is continuous multivariate family data with character IDs
mfkm_c_covariates This is continuous multivariate family data with character IDs
mfkm_c_gene This is continuous multivariate family data with character IDs
mfkm_c_geneid This is continuous multivariate family data with character IDs
mfkm_c_weights This is continuous multivariate family data with character IDs
mfkm_c_y This is continuous multivariate family data with character IDs
MFKM_Null_Model KM for Quantitative Traits in Multivariate Family GWAS Data (fit null model)
MFKM_numID This is continuous multivariate family data with numeric IDs
mfkm_n_covariates This is continuous multivariate family data with numeric IDs
mfkm_n_gene This is continuous multivariate family data with numeric IDs
mfkm_n_geneid This is continuous multivariate family data with numeric IDs
mfkm_n_weights This is continuous multivariate family data with numeric IDs
mfkm_n_y This is continuous multivariate family data with numeric IDs
MKM KM for Quantitative Traits in Multivariate GWAS Data (calculate p-value)
MKMO Optimal KM for Quantitative Traits in Multivariate GWAS Data (calculate p-value)
MKMO_Null_Model Optimal KM for Multiple Quantitative Traits in GWAS Data (fit null model)
MKM_charID This is continuous multivariate data with character IDs
mkm_c_covariates This is continuous multivariate data with character IDs
mkm_c_gene This is continuous multivariate data with character IDs
mkm_c_geneid This is continuous multivariate data with character IDs
mkm_c_ph This is continuous multivariate data with character IDs
mkm_c_weights This is continuous multivariate data with character IDs
MKM_Null_Model KM for Multiple Quantitative Traits in GWAS Data (fit null model)
MKM_numID This is continuous multivariate data with numeric IDs
mkm_n_covariates This is continuous multivariate data with numeric IDs
mkm_n_gene This is continuous multivariate data with numeric IDs
mkm_n_geneid This is continuous multivariate data with numeric IDs
mkm_n_ph This is continuous multivariate data with numeric IDs
mkm_n_weights This is continuous multivariate data with numeric IDs
pheno1 This is survival data
prepCoxKM KM for Survival Traits in GWAS Data (fit null model)
SNPInfo This is survival data
Z1 This is survival data