Mojo Variants: Rare Variants analysis


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Documentation for package ‘MOJOV’ version 1.0.1

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MOJOV-package Mojo Variants: Rare Variants analysis tool.
adjustAuto-method Class '"MOJOV"'
adjustData-method Class '"MOJOV"'
adjustGender-method Class '"MOJOV"'
adjustPower-method Class '"MOJOV"'
adjustPowerPvalue-method Class '"MOJOV"'
adjustPvalue-method Class '"MOJOV"'
adjustTerms-method Class '"MOJOV"'
analyCode-method Class '"MOJOV"'
analyWeighted-method Class '"MOJOV"'
geno A data file contains genotype.
genoChr-method Class '"MOJOV"'
genoFile-method Class '"MOJOV"'
genoGene-method Class '"MOJOV"'
genoH-method Class '"MOJOV"'
genoIID-method Class '"MOJOV"'
genoPosi-method Class '"MOJOV"'
genoVariant-method Class '"MOJOV"'
MOJOV Mojo Variants: Rare Variants analysis tool.
MOJOV-class Class '"MOJOV"'
MOJOV.analysis Analysis between rare variants and quantatitive traits using CMC.
MOJOV.export Export test result from a MOJOV class to file.
MOJOV.genoMatrix A internal function. It generates a genotype matrix.
MOJOV.genoVector A internal function. It makes genotype matrix become a genotype vector.
MOJOV.linearRegAnalysis A internal function. Linear regression analysis between rare variants and phenotype.
MOJOV.phenotype Ajusting phenotype data for covariates.
MOJOV.read Reading genotype and phenotype and generating a "MOJOV" class.
MOJOV.regTermTest A internal function. A test from survey package.
MOJOV.saws A test from saws package.
MOJOV.simulation Simulation for CMC.
MOJOV.summary Exporting summary information for genotype.
MOJOV.Summary-class Class '"MOJOV.Summary"'
MOJOV.wald.test A test from aod package.
MOJOV.weight Providing a weight vector.
phen A data file contains phenotype.
phenoAge-method Class '"MOJOV"'
phenoColumn-method Class '"MOJOV"'
phenoData-method Class '"MOJOV"'
phenoFile-method Class '"MOJOV"'
phenoGender-method Class '"MOJOV"'
phenoHeight-method Class '"MOJOV"'
phenoIID-method Class '"MOJOV"'
phenoIndNum-method Class '"MOJOV"'
phenoLabel-method Class '"MOJOV"'
phenoWeight-method Class '"MOJOV"'
regionChr-method Class '"MOJOV"'
regionFile-method Class '"MOJOV"'
regionGene-method Class '"MOJOV"'
regionPStart-method Class '"MOJOV"'
regionPStop-method Class '"MOJOV"'
regionType-method Class '"MOJOV"'
resultMethod-method Class '"MOJOV"'
resultPvalue-method Class '"MOJOV"'
show-method Class '"MOJOV"'
show-method Class '"MOJOV.Summary"'
varFreq-method Class '"MOJOV"'
varMAF-method Class '"MOJOV"'
varRare-method Class '"MOJOV"'
varTot-method Class '"MOJOV"'